Variant report

Variant	rs74159193
Chromosome Location	chr10:119114980-119114981
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr10:119114627-119115268	HEK293	kidney:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:119109550..119117175-chr10:119118758..119125323,7	K562	blood:
2	chr10:119114580..119117385-chr10:119131872..119134175,2	K562	blood:

Variant related genes	Relation type
ENSG00000222197	TF binding region
ENSG00000165650	Chromatin interaction

rs_ID	r²[population]
rs3026068	0.83[AFR][1000 genomes]
rs363286	0.83[AFR][1000 genomes]
rs363290	0.83[AFR][1000 genomes]
rs363292	0.83[AFR][1000 genomes]
rs363297	0.83[AFR][1000 genomes]
rs55698419	1.00[AFR][1000 genomes]
rs56311829	0.91[AFR][1000 genomes]
rs56382679	0.91[AFR][1000 genomes]
rs56962759	1.00[AFR][1000 genomes]
rs57112183	1.00[AFR][1000 genomes]
rs58653554	1.00[AFR][1000 genomes]
rs59381469	1.00[AFR][1000 genomes]
rs59858809	1.00[AFR][1000 genomes]
rs59968623	1.00[AFR][1000 genomes]
rs61515506	1.00[AFR][1000 genomes]
rs74159162	0.83[AFR][1000 genomes]
rs74159163	0.83[AFR][1000 genomes]
rs74159181	1.00[AFR][1000 genomes]
rs74159182	1.00[AFR][1000 genomes]
rs74159183	1.00[AFR][1000 genomes]
rs74159195	1.00[AFR][1000 genomes]
rs74159196	1.00[AFR][1000 genomes]
rs74159198	1.00[AFR][1000 genomes]
rs74159199	1.00[AFR][1000 genomes]
rs74162306	0.91[AFR][1000 genomes]

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119082400-119118600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:119100200-119131000	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:119102400-119131400	Weak transcription	Psoas Muscle	Psoas
4	chr10:119102600-119119000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:119102800-119119600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:119102800-119123600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:119105000-119115000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:119105000-119118400	Weak transcription	Ovary	ovary
9	chr10:119105000-119119600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:119107200-119116200	Weak transcription	Fetal Intestine Small	intestine
11	chr10:119107200-119131400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:119109400-119130000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:119110600-119115200	Enhancers	K562	blood
14	chr10:119110600-119115400	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr10:119111000-119115200	Enhancers	Primary T cells from cord blood	blood
16	chr10:119111000-119116600	Enhancers	A549	lung
17	chr10:119111000-119124600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr10:119111400-119115000	Weak transcription	Aorta	Aorta
19	chr10:119111600-119115200	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr10:119111600-119115400	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr10:119111600-119116000	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr10:119111800-119115400	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr10:119111800-119115400	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr10:119111800-119116200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr10:119111800-119129000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:119112000-119115200	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr10:119112000-119115400	Enhancers	Primary hematopoietic stem cells	blood
28	chr10:119112000-119115400	Enhancers	Pancreatic Islets	Pancreatic Islet
29	chr10:119112000-119115600	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr10:119112200-119115200	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr10:119112200-119115200	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr10:119112200-119115200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr10:119112200-119115200	Enhancers	Liver	Liver
34	chr10:119112600-119115000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr10:119112600-119115000	Weak transcription	Left Ventricle	heart
36	chr10:119112600-119115200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr10:119112600-119115600	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr10:119112600-119123600	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr10:119112600-119132800	Weak transcription	Gastric	stomach
40	chr10:119112800-119115200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr10:119112800-119115600	Enhancers	Dnd41	blood
42	chr10:119113200-119115000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
43	chr10:119113400-119115200	Enhancers	Duodenum Mucosa	Duodenum
44	chr10:119113400-119115200	Enhancers	HepG2	liver
45	chr10:119113400-119115400	Enhancers	Fetal Intestine Large	intestine
46	chr10:119113600-119118200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr10:119113800-119115000	Weak transcription	Primary B cells from cord blood	blood
48	chr10:119113800-119115200	Enhancers	Sigmoid Colon	Sigmoid Colon
49	chr10:119113800-119119800	Weak transcription	Brain Anterior Caudate	brain
50	chr10:119114000-119115200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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