Variant report

Variant	rs74173629
Chromosome Location	chr20:24098709-24098710
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24092580..24094161-chr20:24096209..24099117,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1160365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34016617	0.89[EUR][1000 genomes]
rs34096340	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34097439	0.89[EUR][1000 genomes]
rs34123386	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35671594	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35675087	0.89[EUR][1000 genomes]
rs6036634	0.84[EUR][1000 genomes]
rs6036639	0.89[EUR][1000 genomes]
rs6036641	0.89[EUR][1000 genomes]
rs6036647	0.89[EUR][1000 genomes]
rs6049376	0.86[EUR][1000 genomes]
rs6049384	0.89[EUR][1000 genomes]
rs6049387	0.89[EUR][1000 genomes]
rs6049388	0.89[EUR][1000 genomes]
rs6049395	0.89[EUR][1000 genomes]
rs6132697	0.89[EUR][1000 genomes]
rs6132698	0.89[EUR][1000 genomes]
rs6132699	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6132702	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6138198	0.86[EUR][1000 genomes]
rs6138199	0.89[EUR][1000 genomes]
rs6138206	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6138211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6138213	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62193667	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1056491	chr20:23955040-24105080	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3328348	chr20:24095746-24285830	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24097000-24100000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
2	chr20:24097200-24099200	Bivalent Enhancer	Fetal Stomach	stomach
3	chr20:24097200-24100000	Enhancers	Fetal Muscle Leg	muscle
4	chr20:24097400-24099600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr20:24097600-24099000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr20:24097600-24099400	Enhancers	NH-A	brain
7	chr20:24097800-24099800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr20:24097800-24100000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr20:24097800-24100200	Enhancers	Osteobl	bone
10	chr20:24098000-24099200	Weak transcription	NHLF	lung
11	chr20:24098000-24099600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr20:24098000-24099600	Enhancers	Placenta Amnion	Placenta Amnion
13	chr20:24098200-24098800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr20:24098200-24099000	Enhancers	Stomach Smooth Muscle	stomach
15	chr20:24098200-24099200	Weak transcription	Esophagus	oesophagus
16	chr20:24098200-24100200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr20:24098200-24100600	Enhancers	Ovary	ovary
18	chr20:24098200-24100800	Enhancers	HUVEC	blood vessel
19	chr20:24098400-24099800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr20:24098400-24099800	Bivalent Enhancer	Adipose Nuclei	Adipose
21	chr20:24098400-24099800	Enhancers	Fetal Lung	lung
22	chr20:24098400-24099800	Enhancers	Rectal Smooth Muscle	rectum
23	chr20:24098400-24100000	Enhancers	Lung	lung
24	chr20:24098400-24100800	Enhancers	Fetal Thymus	thymus
25	chr20:24098600-24099000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr20:24098600-24099400	Enhancers	Colon Smooth Muscle	Colon
27	chr20:24098600-24099400	Enhancers	Duodenum Smooth Muscle	Duodenum
28	chr20:24098600-24099600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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