Variant report

Variant	rs74173644
Chromosome Location	chr20:24407019-24407020
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11696920	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11698416	0.88[EUR][1000 genomes]
rs11698961	0.88[EUR][1000 genomes]
rs11700348	0.88[EUR][1000 genomes]
rs13045353	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34059690	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34212333	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36102524	0.81[EUR][1000 genomes]
rs6114730	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6114732	0.82[EUR][1000 genomes]
rs6515500	0.82[EUR][1000 genomes]
rs74173645	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74173649	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24401200-24412400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr20:24403400-24411400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:24404200-24407200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr20:24405600-24407400	Enhancers	H1 Cell Line	embryonic stem cell
5	chr20:24405600-24407400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr20:24405800-24407400	Enhancers	Fetal Stomach	stomach
7	chr20:24406600-24407400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr20:24407000-24407600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr20:24407000-24407600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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