Variant report

Variant	rs7418217
Chromosome Location	chr1:197272248-197272249
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:197271074..197272952-chr1:197283337..197284871,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10494752	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10801597	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10801598	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10801600	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10801601	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10801602	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10922181	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10922190	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10922197	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10922198	0.80[AMR][1000 genomes]
rs12022402	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12026252	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12045335	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1337006	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1337007	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1337170	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1415210	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1415343	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1577802	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2884645	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4915393	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4915453	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7530522	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7547972	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7548481	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7553508	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197257400-197273400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr1:197265800-197273600	Weak transcription	Brain Germinal Matrix	brain
3	chr1:197269000-197273400	Weak transcription	Brain Anterior Caudate	brain
4	chr1:197269200-197275000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr1:197271600-197273000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr1:197272000-197272800	Enhancers	Hela-S3	cervix
7	chr1:197272000-197275000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links