Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10084269	0.85[ASN][1000 genomes]
rs10165975	0.85[ASN][1000 genomes]
rs10180573	0.84[ASN][1000 genomes]
rs10184286	0.82[ASN][1000 genomes]
rs11124588	0.87[ASN][1000 genomes]
rs12151799	0.92[ASN][1000 genomes]
rs12472489	0.84[ASN][1000 genomes]
rs13407307	0.84[ASN][1000 genomes]
rs4274577	0.84[ASN][1000 genomes]
rs4352210	0.83[ASN][1000 genomes]
rs4387769	0.84[ASN][1000 genomes]
rs4430920	0.85[ASN][1000 genomes]
rs4461243	0.85[ASN][1000 genomes]
rs4524108	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4538180	0.85[ASN][1000 genomes]
rs4633908	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4670726	0.84[ASN][1000 genomes]
rs4670727	0.85[ASN][1000 genomes]
rs62133462	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62135619	0.84[ASN][1000 genomes]
rs62135620	0.84[ASN][1000 genomes]
rs62135623	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6544089	0.91[ASN][1000 genomes]
rs6544090	0.84[ASN][1000 genomes]
rs6705305	0.92[ASN][1000 genomes]
rs6759677	0.82[ASN][1000 genomes]
rs7589042	0.85[ASN][1000 genomes]
rs7593076	0.84[ASN][1000 genomes]
rs9309009	0.84[ASN][1000 genomes]
rs9309010	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833814	chr2:37643132-37840247	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv456374	chr2:37669487-37868214	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv470453	chr2:37669487-37868214	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv581473	chr2:37669487-37868214	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37771400-37774000	Enhancers	Primary B cells from peripheral blood	blood
2	chr2:37771800-37773000	ZNF genes & repeats	GM12878-XiMat	blood
3	chr2:37771800-37779800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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