Variant report

Variant	rs7428367
Chromosome Location	chr3:145508096-145508097
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10935584	0.90[ASN][1000 genomes]
rs11926420	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12695799	0.98[ASN][1000 genomes]
rs13063934	0.91[ASN][1000 genomes]
rs4681256	0.99[ASN][1000 genomes]
rs4681257	0.84[ASN][1000 genomes]
rs4681258	0.99[ASN][1000 genomes]
rs4681259	0.97[ASN][1000 genomes]
rs4681260	0.84[ASN][1000 genomes]
rs4681261	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4681262	0.98[ASN][1000 genomes]
rs4681263	0.98[ASN][1000 genomes]
rs4681264	0.83[ASN][1000 genomes]
rs6440371	0.88[ASN][1000 genomes]
rs6440372	0.84[ASN][1000 genomes]
rs6440373	0.99[ASN][1000 genomes]
rs6440374	0.84[ASN][1000 genomes]
rs6440375	0.99[ASN][1000 genomes]
rs6440376	0.99[ASN][1000 genomes]
rs6440377	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6440378	0.99[ASN][1000 genomes]
rs6440379	0.99[ASN][1000 genomes]
rs6440380	0.99[ASN][1000 genomes]
rs6440381	0.99[ASN][1000 genomes]
rs6440382	0.99[ASN][1000 genomes]
rs6440383	0.99[ASN][1000 genomes]
rs6440384	0.99[ASN][1000 genomes]
rs6440385	0.99[ASN][1000 genomes]
rs6440386	0.98[ASN][1000 genomes]
rs6440387	0.98[ASN][1000 genomes]
rs6770379	0.88[ASN][1000 genomes]
rs6772938	0.99[ASN][1000 genomes]
rs6782403	0.99[ASN][1000 genomes]
rs6783103	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6783698	0.90[ASN][1000 genomes]
rs6793409	0.99[ASN][1000 genomes]
rs6794778	0.88[ASN][1000 genomes]
rs6795250	0.90[ASN][1000 genomes]
rs6796627	0.98[ASN][1000 genomes]
rs7427013	0.99[ASN][1000 genomes]
rs7427041	0.99[ASN][1000 genomes]
rs7432709	0.83[ASN][1000 genomes]
rs9812691	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9826871	0.99[ASN][1000 genomes]
rs9835009	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9845121	0.98[ASN][1000 genomes]
rs9845157	0.98[ASN][1000 genomes]
rs9845771	0.88[ASN][1000 genomes]
rs9850729	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9861465	0.82[ASN][1000 genomes]
rs9866001	0.88[ASN][1000 genomes]
rs9872877	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9878603	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877584	chr3:144903957-145833232	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv3330499	chr3:145334189-145596853	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3379945	chr3:145351163-145679850	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv877610	chr3:145465395-145653627	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv2751980	chr3:145473020-145758194	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1013475	chr3:145478985-145750509	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1010509	chr3:145478985-145757483	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1005624	chr3:145486437-145750509	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv999344	chr3:145506353-145750883	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv536757	chr3:145506353-145750883	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	esv33307	chr3:145506383-145667833	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145507800-145508200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr3:145507800-145508600	Weak transcription	Gastric	stomach
3	chr3:145508000-145508800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links