Variant report

Variant	rs742866
Chromosome Location	chr14:68217208-68217209
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1044126	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158687	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11158688	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11849620	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12879105	0.91[EUR][1000 genomes]
rs17782775	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1955468	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2295111	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56233923	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56412443	0.88[AMR][1000 genomes]
rs61986978	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7149133	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042536	chr14:68136913-68343198	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv542122	chr14:68136913-68343198	Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1054697	chr14:68202004-68345982	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68189000-68218800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr14:68196200-68219000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:68202800-68230800	Weak transcription	Right Atrium	heart
4	chr14:68204000-68219600	Weak transcription	Small Intestine	intestine
5	chr14:68206200-68251000	Weak transcription	K562	blood
6	chr14:68206800-68217600	Weak transcription	HepG2	liver
7	chr14:68210800-68217600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr14:68211400-68218800	Weak transcription	Psoas Muscle	Psoas
9	chr14:68211600-68230800	Weak transcription	Stomach Mucosa	stomach
10	chr14:68212400-68282800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr14:68212800-68222200	Strong transcription	Stomach Smooth Muscle	stomach
12	chr14:68212800-68224000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr14:68212800-68224400	Strong transcription	Brain Hippocampus Middle	brain
14	chr14:68212800-68225400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr14:68212800-68225400	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr14:68212800-68229800	Strong transcription	Fetal Intestine Large	intestine
17	chr14:68213000-68218800	Weak transcription	HUVEC	blood vessel
18	chr14:68213000-68225400	Strong transcription	Adipose Nuclei	Adipose
19	chr14:68213000-68225400	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr14:68213000-68229800	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr14:68213000-68233000	Strong transcription	Primary hematopoietic stem cells	blood
22	chr14:68213000-68233000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr14:68213000-68280800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr14:68213200-68221800	Strong transcription	Brain Angular Gyrus	brain
25	chr14:68213200-68223400	Strong transcription	Primary B cells from cord blood	blood
26	chr14:68213200-68224400	Strong transcription	Primary T cells from cord blood	blood
27	chr14:68213200-68229800	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr14:68213200-68243200	Strong transcription	Skeletal Muscle Female	skeletal muscle
29	chr14:68213400-68222200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr14:68213400-68225400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr14:68213400-68281200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr14:68213600-68218000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr14:68213600-68222600	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr14:68213600-68225200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr14:68213600-68229200	Strong transcription	Placenta	Placenta
36	chr14:68213600-68279600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr14:68213800-68222200	Strong transcription	Left Ventricle	heart
38	chr14:68213800-68222200	Strong transcription	Ovary	ovary
39	chr14:68213800-68223000	Strong transcription	Lung	lung
40	chr14:68213800-68225400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr14:68213800-68225800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr14:68213800-68228800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr14:68213800-68237000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr14:68213800-68280600	Strong transcription	Liver	Liver
45	chr14:68214000-68222200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr14:68214000-68222800	Strong transcription	Duodenum Mucosa	Duodenum
47	chr14:68214000-68223000	Strong transcription	Aorta	Aorta
48	chr14:68214000-68224200	Strong transcription	Thymus	Thymus
49	chr14:68214000-68225400	Strong transcription	Brain Inferior Temporal Lobe	brain
50	chr14:68214000-68232000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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