Variant report

Variant	rs7429900
Chromosome Location	chr3:178569465-178569466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11715386	0.82[EUR][1000 genomes]
rs11719127	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11719680	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11720217	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11927555	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4380396	0.87[CHB][hapmap]
rs4381916	0.87[CHB][hapmap];0.83[JPT][hapmap]
rs4597761	0.81[AMR][1000 genomes]
rs56037026	0.82[EUR][1000 genomes]
rs6443597	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6769674	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6782172	0.82[EUR][1000 genomes]
rs6782819	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs6805942	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6807126	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73185342	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7612721	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178566600-178570200	Enhancers	Fetal Lung	lung
2	chr3:178567200-178575000	Weak transcription	Right Ventricle	heart
3	chr3:178567600-178569800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:178568000-178578200	Weak transcription	HSMM	muscle
5	chr3:178568200-178569800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:178568200-178577400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:178568600-178570400	Enhancers	Fetal Heart	heart
8	chr3:178569200-178572400	Weak transcription	HSMMtube	muscle
9	chr3:178569200-178572800	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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