Variant report

Variant	rs7431061
Chromosome Location	chr3:144806734-144806735
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11709794	0.90[EUR][1000 genomes]
rs12497860	0.90[EUR][1000 genomes]
rs13061517	0.93[EUR][1000 genomes]
rs62275332	0.90[EUR][1000 genomes]
rs62275333	0.90[EUR][1000 genomes]
rs62275334	0.90[EUR][1000 genomes]
rs7429000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7632301	0.95[ASN][1000 genomes]
rs7632966	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9833535	0.93[EUR][1000 genomes]
rs9851294	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1005754	chr3:144529346-144984363	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1004792	chr3:144658885-145191801	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv877577	chr3:144701909-144864974	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv877578	chr3:144734068-144843921	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144806000-144811000	Weak transcription	Fetal Heart	heart
2	chr3:144806200-144807000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr3:144806400-144807400	Enhancers	Primary B cells from cord blood	blood
4	chr3:144806600-144807000	Enhancers	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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