Variant report

Variant	rs74326901
Chromosome Location	chr15:76483467-76483468
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr15:76481901-76484038	A549	lung:	n/a	chr15:76483268-76483284 chr15:76483269-76483290 chr15:76483271-76483278 chr15:76483267-76483285 chr15:76483801-76483814 chr15:76483318-76483326
2	RAD21	chr15:76483096-76483478	SK-N-SH_RA	brain:	n/a	chr15:76483268-76483287
3	MYC	chr15:76483174-76483527	K562	blood:	n/a	n/a
4	RAD21	chr15:76483119-76483507	A549	lung:	n/a	chr15:76483268-76483287
5	TEAD4	chr15:76483116-76483505	H1-hESC	embryonic stem cell:	n/a	n/a
6	MAX	chr15:76482987-76483494	ECC-1	luminal epithelium:	n/a	n/a
7	MAX	chr15:76482966-76483547	H1-hESC	embryonic stem cell:	n/a	n/a
8	RAD21	chr15:76482974-76483644	ECC-1	luminal epithelium:	n/a	chr15:76483268-76483287
9	CTCF	chr15:76482918-76483581	MCF-7	breast:	n/a	chr15:76483268-76483284 chr15:76483269-76483290 chr15:76483271-76483278 chr15:76483267-76483285 chr15:76483318-76483326
10	POU2F2	chr15:76483047-76483517	GM12891	blood:	n/a	n/a
11	GTF2F1	chr15:76483091-76483547	Hela-S3	cervix:	n/a	n/a
12	CTCF	chr15:76483041-76483482	K562	blood:	n/a	chr15:76483268-76483284 chr15:76483269-76483290 chr15:76483271-76483278 chr15:76483267-76483285 chr15:76483318-76483326
13	RAD21	chr15:76483028-76483610	A549	lung:	n/a	chr15:76483268-76483287
14	YY1	chr15:76483062-76483481	GM12892	blood:	n/a	n/a
15	USF2	chr15:76483034-76483552	HepG2	liver:	n/a	n/a
16	CTCF	chr15:76482975-76483632	MCF-7	breast:	n/a	chr15:76483268-76483284 chr15:76483269-76483290 chr15:76483271-76483278 chr15:76483267-76483285 chr15:76483318-76483326
17	MXI1	chr15:76483172-76483494	GM12878	blood:	n/a	n/a
18	USF2	chr15:76483014-76483509	Hela-S3	cervix:	n/a	n/a
19	YY1	chr15:76483040-76483505	HepG2	liver:	n/a	n/a
20	MAX	chr15:76483094-76483528	NB4	blood:	n/a	n/a
21	CTCF	chr15:76483023-76483491	A549	lung:	n/a	chr15:76483268-76483284 chr15:76483269-76483290 chr15:76483271-76483278 chr15:76483267-76483285 chr15:76483318-76483326
22	RAD21	chr15:76483057-76483481	HepG2	liver:	n/a	chr15:76483268-76483287
23	ZNF143	chr15:76483108-76483474	K562	blood:	n/a	chr15:76483308-76483326
24	RAD21	chr15:76482962-76483571	H1-hESC	embryonic stem cell:	n/a	chr15:76483268-76483287
25	SMC3	chr15:76483083-76483501	K562	blood:	n/a	chr15:76483269-76483283
26	RAD21	chr15:76483062-76483481	GM12878	blood:	n/a	chr15:76483268-76483287
27	TBL1XR1	chr15:76483176-76483569	K562	blood:	n/a	n/a
28	MAFK	chr15:76483006-76483624	Hela-S3	cervix:	n/a	n/a
29	NFIC	chr15:76483154-76483634	GM12878	blood:	n/a	n/a
30	SMC3	chr15:76483033-76483505	HepG2	liver:	n/a	chr15:76483269-76483283
31	SMC3	chr15:76482760-76483764	Hela-S3	cervix:	n/a	chr15:76483269-76483283
32	HA-E2F1	chr15:76482889-76483786	MCF-7	breast:	n/a	n/a
33	RAD21	chr15:76482917-76483707	A549	lung:	n/a	chr15:76483268-76483287
34	SMC3	chr15:76483076-76483930	GM12878	blood:	n/a	chr15:76483269-76483283
35	FOXM1	chr15:76482975-76483938	GM12878	blood:	n/a	n/a
36	RAD21	chr15:76483055-76483500	HepG2	liver:	n/a	chr15:76483268-76483287
37	CTCF	chr15:76483043-76484008	GM12878	blood:	n/a	chr15:76483268-76483284 chr15:76483269-76483290 chr15:76483271-76483278 chr15:76483267-76483285 chr15:76483801-76483814 chr15:76483318-76483326
38	E2F6	chr15:76482875-76483569	H1-hESC	embryonic stem cell:	n/a	n/a
39	RAD21	chr15:76483017-76483626	Hela-S3	cervix:	n/a	chr15:76483268-76483287
40	STAT5A	chr15:76483051-76484013	GM12878	blood:	n/a	n/a
41	ELK1	chr15:76483179-76483546	GM12878	blood:	n/a	n/a
42	RAD21	chr15:76483091-76483547	HepG2	liver:	n/a	chr15:76483268-76483287
43	MTA3	chr15:76482981-76484062	GM12878	blood:	n/a	n/a
44	RAD21	chr15:76483012-76483564	ECC-1	luminal epithelium:	n/a	chr15:76483268-76483287
45	RAD21	chr15:76483094-76483484	K562	blood:	n/a	chr15:76483268-76483287
46	CTCF	chr15:76482982-76483480	K562	blood:	n/a	chr15:76483268-76483284 chr15:76483269-76483290 chr15:76483271-76483278 chr15:76483267-76483285 chr15:76483318-76483326
47	RAD21	chr15:76483007-76483746	HCT-116	colon:	n/a	chr15:76483268-76483287
48	MAZ	chr15:76482983-76483637	IMR90	lung:	n/a	n/a
49	ELF1	chr15:76483125-76483506	GM12878	blood:	n/a	n/a
50	CTCF	chr15:76483020-76483545	A549	lung:	n/a	chr15:76483268-76483284 chr15:76483269-76483290 chr15:76483271-76483278 chr15:76483267-76483285 chr15:76483318-76483326

No.	Distal block	Cell Line	Cell type
1	chr15:76482820..76483740-chr15:76577311..76578273,3	K562	blood:
2	chr15:76483018..76483722-chr15:76622624..76623279,3	K562	blood:
3	chr15:76482924..76483751-chr15:76625816..76626899,5	MCF-7	breast:
4	chr15:76483246..76483790-chr15:77158830..77159724,2	K562	blood:
5	chr15:76482702..76486394-chr15:76633656..76636389,3	K562	blood:
6	chr15:76481529..76484202-chr15:76633877..76636476,2	K562	blood:
7	chr15:76482829..76483665-chr15:77158796..77159907,4	MCF-7	breast:
8	chr15:76482846..76483696-chr15:76577399..76578194,4	MCF-7	breast:
9	chr15:76472338..76474227-chr15:76482406..76484297,2	K562	blood:
10	chr15:76482689..76486583-chr15:76628039..76631365,3	K562	blood:
11	chr15:76482840..76483720-chr15:77132911..77133894,4	MCF-7	breast:
12	chr15:76483216..76483808-chr15:76625887..76626857,3	K562	blood:
13	chr15:76483023..76483731-chr15:76527305..76528242,4	MCF-7	breast:

Variant related genes	Relation type
C15orf27	TF binding region
ENSG00000259422	Chromatin interaction
ENSG00000159556	Chromatin interaction
ENSG00000270036	Chromatin interaction
ENSG00000259514	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1048760	chr15:76334544-76496977	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1045860	chr15:76431374-76485536	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
5	nsv1053643	chr15:76431374-76485966	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
6	nsv1052496	chr15:76432823-76484981	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
7	nsv1036319	chr15:76432823-76489955	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
8	nsv1047539	chr15:76435640-76485966	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
9	nsv1042750	chr15:76435640-76490547	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
10	nsv1054289	chr15:76437970-76485966	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
11	nsv1041435	chr15:76444695-76484981	Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
12	nsv1046448	chr15:76444695-76485966	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
13	nsv1046099	chr15:76444695-76490547	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
14	nsv1044603	chr15:76445689-76484981	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
15	nsv1043026	chr15:76445689-76485966	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
16	nsv1041619	chr15:76454194-76484981	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
17	nsv1046485	chr15:76454194-76485536	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
18	nsv1053572	chr15:76454194-76485966	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
19	nsv1049916	chr15:76454194-76490547	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
20	nsv1053775	chr15:76460462-76485966	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
21	nsv1054713	chr15:76460462-76505906	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
22	esv274972	chr15:76483342-76485536	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76478200-76488400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:76478600-76487800	Weak transcription	Right Atrium	heart
3	chr15:76479800-76487400	Weak transcription	Psoas Muscle	Psoas
4	chr15:76481800-76484800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:76482600-76483600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr15:76482600-76483800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr15:76482600-76484200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
8	chr15:76482600-76484400	Enhancers	Spleen	Spleen
9	chr15:76482600-76484600	Enhancers	Gastric	stomach
10	chr15:76482800-76483600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:76482800-76483600	Enhancers	Fetal Heart	heart
12	chr15:76482800-76483600	Flanking Active TSS	Hela-S3	cervix
13	chr15:76482800-76483800	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr15:76482800-76483800	Enhancers	HMEC	breast
15	chr15:76482800-76484000	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr15:76482800-76484200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
17	chr15:76482800-76484200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
18	chr15:76482800-76484200	Bivalent Enhancer	Fetal Intestine Small	intestine
19	chr15:76482800-76484400	Bivalent Enhancer	Fetal Muscle Leg	muscle
20	chr15:76483000-76483600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr15:76483000-76483600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
22	chr15:76483000-76483600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr15:76483000-76483600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr15:76483000-76483600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr15:76483000-76483600	Active TSS	Colonic Mucosa	Colon
26	chr15:76483000-76483600	Bivalent Enhancer	Fetal Kidney	kidney
27	chr15:76483000-76483600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
28	chr15:76483000-76483600	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr15:76483000-76483600	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
30	chr15:76483000-76483600	Enhancers	K562	blood
31	chr15:76483000-76483600	Enhancers	NH-A	brain
32	chr15:76483000-76483600	Bivalent Enhancer	NHLF	lung
33	chr15:76483000-76483800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
34	chr15:76483000-76483800	Enhancers	Liver	Liver
35	chr15:76483000-76483800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
36	chr15:76483000-76483800	Bivalent Enhancer	Fetal Brain Male	brain
37	chr15:76483000-76483800	Enhancers	HUVEC	blood vessel
38	chr15:76483000-76483800	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
39	chr15:76483000-76484000	Enhancers	Primary T helper naive cells from peripheral blood	blood
40	chr15:76483000-76484000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
41	chr15:76483000-76484000	Bivalent Enhancer	Fetal Thymus	thymus
42	chr15:76483000-76484200	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
43	chr15:76483000-76484800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr15:76483200-76483600	Enhancers	H9 Cell Line	embryonic stem cell
45	chr15:76483200-76483600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr15:76483200-76483600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
47	chr15:76483200-76483600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr15:76483200-76483600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
49	chr15:76483200-76483600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
50	chr15:76483200-76483600	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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