Variant report
Variant | rs7448746 |
---|---|
Chromosome Location | chr5:92576494-92576495 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10428523 | 0.83[AMR][1000 genomes] |
rs11738974 | 0.83[AMR][1000 genomes] |
rs4242240 | 0.81[AMR][1000 genomes] |
rs4242241 | 0.81[AMR][1000 genomes] |
rs4242242 | 0.83[AMR][1000 genomes] |
rs4264926 | 0.81[AMR][1000 genomes] |
rs4266388 | 0.83[AMR][1000 genomes] |
rs4285204 | 0.81[AMR][1000 genomes] |
rs4293897 | 0.83[AMR][1000 genomes] |
rs4302568 | 0.81[AMR][1000 genomes] |
rs4321736 | 0.83[AMR][1000 genomes] |
rs4449514 | 0.80[AMR][1000 genomes] |
rs4551051 | 0.81[AMR][1000 genomes] |
rs4557386 | 0.80[AMR][1000 genomes] |
rs4632783 | 0.81[AMR][1000 genomes] |
rs4869191 | 0.80[AMR][1000 genomes] |
rs4869415 | 0.80[AMR][1000 genomes] |
rs57542119 | 0.80[AMR][1000 genomes] |
rs59262698 | 0.81[AMR][1000 genomes] |
rs6557066 | 0.83[AMR][1000 genomes] |
rs67217436 | 0.81[AMR][1000 genomes] |
rs67862943 | 0.83[AMR][1000 genomes] |
rs6863269 | 0.80[AMR][1000 genomes] |
rs6873367 | 0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs6897863 | 0.83[AMR][1000 genomes] |
rs7700810 | 0.83[AMR][1000 genomes] |
rs7714485 | 0.83[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv830400 | chr5:92515026-92738896 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
2 | nsv830401 | chr5:92518294-92703611 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
3 | nsv462252 | chr5:92557969-92595939 | Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
4 | nsv598941 | chr5:92557969-92595939 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | nsv462253 | chr5:92557969-92611658 | Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
6 | nsv598942 | chr5:92557969-92611658 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
7 | nsv1028785 | chr5:92564952-92596445 | Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
8 | nsv882381 | chr5:92576494-92649716 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:92573000-92579000 | Weak transcription | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
2 | chr5:92573000-92581000 | Weak transcription | NHLF | lung |
3 | chr5:92573600-92581000 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
4 | chr5:92573600-92585400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |