Variant report

Variant	rs7453441
Chromosome Location	chr6:54772098-54772099
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1503137	1.00[CHB][hapmap]
rs1503150	1.00[CHB][hapmap]
rs16886072	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs16886073	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs16886088	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs16886105	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1910352	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs239787	1.00[CHB][hapmap]
rs239788	1.00[CHB][hapmap]
rs239789	1.00[CHB][hapmap]
rs239791	1.00[CHB][hapmap]
rs239793	1.00[CHB][hapmap]
rs239798	1.00[CHB][hapmap]
rs239802	1.00[CHB][hapmap]
rs239805	1.00[CHB][hapmap]
rs239823	1.00[CHB][hapmap]
rs239824	1.00[CHB][hapmap]
rs239828	1.00[CHB][hapmap]
rs239829	1.00[CHB][hapmap]
rs239830	1.00[CHB][hapmap]
rs239831	1.00[CHB][hapmap]
rs239832	1.00[CHB][hapmap]
rs239833	1.00[CHB][hapmap]
rs239834	1.00[CHB][hapmap]
rs239836	1.00[CHB][hapmap]
rs239838	1.00[CHB][hapmap]
rs239839	1.00[CHB][hapmap]
rs239840	1.00[CHB][hapmap]
rs239841	1.00[CHB][hapmap]
rs239843	1.00[CHB][hapmap]
rs239846	1.00[CHB][hapmap]
rs239847	1.00[CHB][hapmap]
rs239848	1.00[CHB][hapmap]
rs239852	1.00[CHB][hapmap]
rs239853	1.00[CHB][hapmap]
rs2746440	1.00[CHB][hapmap]
rs35620314	0.84[ASN][1000 genomes]
rs398483	1.00[CHB][hapmap]
rs406149	1.00[CHB][hapmap]
rs41431945	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs59689523	0.85[EUR][1000 genomes]
rs7739951	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7743188	1.00[CHB][hapmap]
rs7773204	1.00[CHB][hapmap]
rs9349735	1.00[CHB][hapmap]
rs9367588	1.00[CHB][hapmap]
rs9367589	1.00[CHB][hapmap]
rs9367596	1.00[CHB][hapmap]
rs9370335	1.00[CHB][hapmap]
rs9382377	1.00[CHB][hapmap]
rs9382388	1.00[CHB][hapmap]
rs9395992	1.00[CHB][hapmap]
rs9475077	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2763553	chr6:54687979-54820487	Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54758000-54775000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:54762000-54775000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr6:54762200-54775000	Weak transcription	Fetal Intestine Small	intestine
4	chr6:54763600-54775000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr6:54765600-54774400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:54765800-54780800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:54769000-54780800	Weak transcription	NHEK	skin
8	chr6:54770000-54775000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr6:54770000-54775000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:54770000-54781200	Weak transcription	HMEC	breast
11	chr6:54771600-54772200	Enhancers	Fetal Lung	lung
12	chr6:54772000-54772600	Active TSS	Pancreatic Islets	Pancreatic Islet

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