Variant report

Variant	rs7454101
Chromosome Location	chr6:151079653-151079654
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:151074081..151075866-chr6:151078456..151080044,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11965555	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11966279	0.82[AFR][1000 genomes]
rs11968895	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1968998	0.81[EUR][1000 genomes]
rs3734408	0.81[AFR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3734409	0.81[AFR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3734410	0.82[AFR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3734411	0.83[EUR][1000 genomes]
rs3734413	0.81[AFR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58164449	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72570336	0.83[EUR][1000 genomes]
rs9918380	0.93[AFR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030326	chr6:150967665-151641372	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1019919	chr6:151028969-151161789	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv538474	chr6:151028969-151161789	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:151042600-151085400	Weak transcription	Esophagus	oesophagus
2	chr6:151056000-151087200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr6:151061600-151112200	Weak transcription	Right Atrium	heart
4	chr6:151072800-151085600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:151075200-151085000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:151075200-151093600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr6:151075400-151083800	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:151075400-151084400	Weak transcription	Fetal Stomach	stomach
9	chr6:151075400-151085600	Weak transcription	Ovary	ovary
10	chr6:151075400-151086600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:151075600-151082600	Weak transcription	Fetal Kidney	kidney
12	chr6:151075600-151085600	Weak transcription	Fetal Brain Female	brain
13	chr6:151075600-151094400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:151075800-151084600	Weak transcription	Placenta	Placenta
15	chr6:151076200-151085400	Weak transcription	Fetal Lung	lung
16	chr6:151076400-151083600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:151076800-151080000	Weak transcription	Spleen	Spleen
18	chr6:151076800-151082600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr6:151077400-151080000	Weak transcription	Lung	lung
20	chr6:151077400-151084400	Weak transcription	Thymus	Thymus
21	chr6:151077600-151082600	Weak transcription	Fetal Muscle Trunk	muscle
22	chr6:151077600-151083600	Weak transcription	Brain Substantia Nigra	brain
23	chr6:151077800-151082600	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr6:151078000-151080000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:151078000-151081200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr6:151078000-151082600	Weak transcription	Fetal Thymus	thymus
27	chr6:151078000-151087000	Weak transcription	NH-A	brain
28	chr6:151078800-151084600	Weak transcription	Fetal Heart	heart
29	chr6:151079200-151079800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:151079200-151080000	Weak transcription	Primary B cells from peripheral blood	blood
31	chr6:151079400-151080000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:151079400-151080000	Weak transcription	Primary B cells from cord blood	blood

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