Variant report

Variant	rs74588782
Chromosome Location	chr1:93252855-93252856
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr1:93252852-93252871	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:93250918..93254010-chr1:93306747..93309482,3	K562	blood:
2	chr1:93251113..93254538-chr1:93261545..93264232,3	K562	blood:
3	chr1:93249024..93254901-chr1:93255339..93260264,13	K562	blood:
4	chr1:93251020..93253744-chr1:93303793..93305482,2	K562	blood:
5	chr1:93251519..93253551-chr1:93306747..93308884,2	K562	blood:
6	chr1:93249360..93255989-chr1:93295958..93302033,8	K562	blood:

No data

No data

No data

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv947289	chr1:93251307-93276080	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93250200-93256800	Weak transcription	Fetal Heart	heart
2	chr1:93251200-93257200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:93251200-93257400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:93251200-93257400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:93251400-93255200	Weak transcription	Spleen	Spleen
6	chr1:93251400-93255400	Weak transcription	HepG2	liver
7	chr1:93251600-93253200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr1:93251600-93256800	Weak transcription	Right Atrium	heart
9	chr1:93252000-93253200	Enhancers	Stomach Mucosa	stomach
10	chr1:93252200-93254400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr1:93252200-93257400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr1:93252400-93257400	Weak transcription	HUVEC	blood vessel
13	chr1:93252600-93253000	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr1:93252800-93253000	Enhancers	Primary B cells from cord blood	blood
15	chr1:93252800-93256400	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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