Variant report
| Variant | rs7462712 |
|---|---|
| Chromosome Location | chr8:63765131-63765132 |
| allele | A/C/G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10095936 | 0.81[ASN][1000 genomes] |
| rs10216382 | 0.81[ASN][1000 genomes] |
| rs10957250 | 0.80[ASN][1000 genomes] |
| rs11779748 | 0.80[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12679603 | 0.87[ASN][1000 genomes] |
| rs13249030 | 0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs13274287 | 0.92[ASN][1000 genomes] |
| rs1350055 | 0.81[ASN][1000 genomes] |
| rs1350056 | 0.81[ASN][1000 genomes] |
| rs1480113 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs2168318 | 0.81[ASN][1000 genomes] |
| rs2352236 | 0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs35448187 | 0.87[ASN][1000 genomes] |
| rs4302833 | 0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4332128 | 0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4446730 | 0.82[ASN][1000 genomes] |
| rs6472055 | 0.80[ASN][1000 genomes] |
| rs6984039 | 0.81[ASN][1000 genomes] |
| rs7018000 | 0.81[ASN][1000 genomes] |
| rs7018025 | 0.87[ASN][1000 genomes] |
| rs7018340 | 0.87[ASN][1000 genomes] |
| rs7826606 | 0.84[ASN][1000 genomes] |
| rs7830715 | 0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7836848 | 0.81[ASN][1000 genomes] |
| rs7842329 | 0.87[ASN][1000 genomes] |
| rs899674 | 0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs899680 | 0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs979262 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018879 | chr8:63281724-63937632 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv831341 | chr8:63658694-63852213 | Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv1033527 | chr8:63673915-64073735 | Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 4 | nsv890961 | chr8:63708519-63773787 | Weak transcription Active TSS Enhancers ZNF genes & repeats | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv890962 | chr8:63708519-63812686 | Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:63759000-63776400 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
