Variant report

Variant	rs7462794
Chromosome Location	chr8:10445051-10445052
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:10444578..10445174-chr8:10671828..10672358,2	MCF-7	breast:
2	chr8:10444549..10445532-chr8:10658177..10659296,3	K562	blood:
3	chr8:10405624..10406204-chr8:10444484..10445163,2	MCF-7	breast:
4	chr8:10444505..10445571-chr8:10696284..10697359,4	K562	blood:
5	chr8:10444886..10445502-chr8:10682512..10683360,2	MCF-7	breast:
6	chr8:10444970..10445545-chr8:10682548..10683133,2	K562	blood:
7	chr8:10437716..10439367-chr8:10443929..10446771,2	K562	blood:
8	chr8:10444435..10445487-chr8:10682600..10683390,5	MCF-7	breast:
9	chr8:10444778..10445703-chr8:10786032..10786596,2	MCF-7	breast:
10	chr8:10444773..10445405-chr8:10656129..10656744,2	MCF-7	breast:
11	chr8:10443749..10446739-chr8:10451129..10452843,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000254093	Chromatin interaction
ENSG00000258724	Chromatin interaction

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10088134	1.00[EUR][1000 genomes]
rs10092761	1.00[EUR][1000 genomes]
rs10093620	1.00[EUR][1000 genomes]
rs10098744	1.00[EUR][1000 genomes]
rs10098752	1.00[GIH][hapmap];1.00[EUR][1000 genomes]
rs10109127	1.00[EUR][1000 genomes]
rs10156246	1.00[EUR][1000 genomes]
rs10903329	1.00[EUR][1000 genomes]
rs11250032	1.00[EUR][1000 genomes]
rs11250041	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11250042	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11250043	1.00[EUR][1000 genomes]
rs11250044	1.00[EUR][1000 genomes]
rs11250046	1.00[EUR][1000 genomes]
rs11250047	1.00[EUR][1000 genomes]
rs11990633	1.00[EUR][1000 genomes]
rs11992333	1.00[EUR][1000 genomes]
rs12114682	1.00[EUR][1000 genomes]
rs12334572	1.00[EUR][1000 genomes]
rs12549970	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12550485	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13270972	1.00[EUR][1000 genomes]
rs17384171	1.00[EUR][1000 genomes]
rs28412714	1.00[EUR][1000 genomes]
rs28465197	1.00[EUR][1000 genomes]
rs28534846	1.00[EUR][1000 genomes]
rs28545293	1.00[EUR][1000 genomes]
rs28590472	1.00[EUR][1000 genomes]
rs28607769	1.00[EUR][1000 genomes]
rs28634875	1.00[EUR][1000 genomes]
rs28668680	1.00[EUR][1000 genomes]
rs4255099	1.00[EUR][1000 genomes]
rs4259384	1.00[EUR][1000 genomes]
rs4330653	0.93[ASW][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4342553	1.00[EUR][1000 genomes]
rs4419779	1.00[EUR][1000 genomes]
rs4590401	1.00[EUR][1000 genomes]
rs4637782	1.00[EUR][1000 genomes]
rs4840503	0.81[GIH][hapmap]
rs4841387	0.83[AMR][1000 genomes]
rs4841388	1.00[EUR][1000 genomes]
rs4841393	1.00[EUR][1000 genomes]
rs55731228	1.00[EUR][1000 genomes]
rs55919609	1.00[EUR][1000 genomes]
rs56074164	1.00[EUR][1000 genomes]
rs56406662	1.00[EUR][1000 genomes]
rs56913988	1.00[EUR][1000 genomes]
rs57438570	1.00[EUR][1000 genomes]
rs57492791	1.00[EUR][1000 genomes]
rs58346791	1.00[EUR][1000 genomes]
rs59657261	1.00[EUR][1000 genomes]
rs73662848	1.00[EUR][1000 genomes]
rs73662856	1.00[EUR][1000 genomes]
rs73662859	1.00[EUR][1000 genomes]
rs73662861	1.00[EUR][1000 genomes]
rs73662862	1.00[EUR][1000 genomes]
rs73662863	1.00[EUR][1000 genomes]
rs73662864	1.00[EUR][1000 genomes]
rs73662865	1.00[EUR][1000 genomes]
rs73662866	1.00[EUR][1000 genomes]
rs73662867	1.00[EUR][1000 genomes]
rs73662870	1.00[EUR][1000 genomes]
rs73662871	1.00[EUR][1000 genomes]
rs73662872	1.00[EUR][1000 genomes]
rs7462362	1.00[EUR][1000 genomes]
rs7462370	1.00[EUR][1000 genomes]
rs7837411	1.00[EUR][1000 genomes]
rs7840077	1.00[EUR][1000 genomes]
rs9987400	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1022994	chr8:10190618-10660122	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv539466	chr8:10190618-10660122	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv1025557	chr8:10216726-10555187	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv610267	chr8:10268736-10526742	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv610268	chr8:10331636-10486652	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
8	nsv1025251	chr8:10343591-10488557	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	nsv1015932	chr8:10357101-10597856	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
10	nsv610269	chr8:10416017-10461484	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv610271	chr8:10438796-10459203	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv890351	chr8:10439902-10482372	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10439000-10453000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:10439800-10445400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:10443400-10447400	Weak transcription	Fetal Muscle Leg	muscle
4	chr8:10444800-10445200	Enhancers	Adipose Nuclei	Adipose
5	chr8:10444800-10445200	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr8:10444800-10445400	Enhancers	Primary B cells from peripheral blood	blood
7	chr8:10444800-10445400	Enhancers	Liver	Liver
8	chr8:10444800-10445400	Enhancers	Pancreas	Pancrea
9	chr8:10445000-10445200	Flanking Active TSS	Fetal Kidney	kidney
10	chr8:10445000-10445400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr8:10445000-10445400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr8:10445000-10445400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr8:10445000-10445400	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr8:10445000-10445400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr8:10445000-10445400	Enhancers	GM12878-XiMat	blood
16	chr8:10445000-10445600	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr8:10445000-10445600	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr8:10445000-10445600	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr8:10445000-10445600	Enhancers	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links