Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10086139	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10102076	0.92[EUR][1000 genomes]
rs10110180	0.92[EUR][1000 genomes]
rs10283333	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11988945	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12708014	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13266641	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13280015	0.89[AMR][1000 genomes]
rs1369455	0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1435459	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17209651	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2043525	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2217828	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28540594	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3924926	0.92[EUR][1000 genomes]
rs4446729	1.00[CHB][hapmap]
rs6991201	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7016339	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7463230	0.90[EUR][1000 genomes]
rs7838636	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831342	chr8:64084331-64294941	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv890967	chr8:64107847-64454446	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv1816645	chr8:64161544-64184282	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64174200-64180400	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr8:64178000-64180800	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr8:64178200-64182400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr8:64178400-64180400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr8:64178400-64181800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr8:64178400-64182400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr8:64178800-64192800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr8:64179200-64183000	Weak transcription	HSMM	muscle
9	chr8:64179400-64179800	Weak transcription	Primary hematopoietic stem cells	blood

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