Variant report

Variant	rs746767
Chromosome Location	chr1:220958959-220958960
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:220958619-220961999	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr1:220958656-220959124	HepG2	liver:	n/a	n/a
3	KAP1	chr1:220958335-220960481	HEK293	kidney:	n/a	n/a
4	POLR2A	chr1:220958731-220959093	MCF-7	breast:	n/a	n/a
5	POLR2A	chr1:220958587-220959248	GM12892	blood:	n/a	n/a
6	NR2F2	chr1:220958010-220959261	MCF-7	breast:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:220956529..220963831-chr1:220968712..220974793,12	MCF-7	breast:
2	chr1:220920087..220922800-chr1:220958239..220960991,2	MCF-7	breast:
3	chr1:220958915..220961807-chr1:220964103..220968214,4	MCF-7	breast:
4	chr1:220958940..220961119-chr1:220964763..220966587,2	MCF-7	breast:
5	chr1:220956861..220959223-chr1:220961892..220963473,2	MCF-7	breast:
6	chr1:220943102..220945279-chr1:220957111..220959212,2	MCF-7	breast:
7	chr1:220947345..220950182-chr1:220956454..220959292,3	MCF-7	breast:

No data

Variant related genes	Relation type
MARC1	TF binding region
ENSG00000186205	Chromatin interaction
ENSG00000117791	Chromatin interaction

Extended variants
information (count: 155 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:155)

rs_ID	r²[population]
rs10863563	0.95[ASN][1000 genomes]
rs10863565	0.82[JPT][hapmap]
rs11118602	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11118603	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11118604	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1113125	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11557506	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12021979	0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12023067	0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12023202	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12023249	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12023303	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12023484	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12024252	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12026135	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12026176	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12026612	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12026813	0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12026877	0.95[ASN][1000 genomes]
rs12027068	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12027298	0.82[JPT][hapmap];1.00[EUR][1000 genomes]
rs12027302	1.00[EUR][1000 genomes]
rs12027337	1.00[EUR][1000 genomes]
rs12027930	0.95[ASN][1000 genomes]
rs12028584	0.95[ASN][1000 genomes]
rs12028887	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12029761	0.92[ASN][1000 genomes]
rs12029763	0.95[ASN][1000 genomes]
rs12029901	1.00[JPT][hapmap]
rs12030190	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12030249	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MKK][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12030434	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12030456	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12031217	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[ASN][1000 genomes]
rs12031225	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12031479	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12031951	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12032061	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[ASN][1000 genomes]
rs12032336	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12033121	1.00[ASN][1000 genomes]
rs12033644	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12033645	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12033732	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12033808	0.89[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12034685	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12034691	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12034995	1.00[JPT][hapmap]
rs12035639	0.88[CHB][hapmap]
rs12038224	1.00[CHB][hapmap];0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[YRI][hapmap];0.95[ASN][1000 genomes]
rs12039043	0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[ASN][1000 genomes]
rs12039064	0.89[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[ASN][1000 genomes]
rs12039091	0.89[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[ASN][1000 genomes]
rs12039273	0.85[ASN][1000 genomes]
rs12039436	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12041919	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12041923	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12041952	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12041956	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12042585	0.82[JPT][hapmap]
rs12043169	0.81[ASN][1000 genomes]
rs12043238	1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12043252	1.00[ASN][1000 genomes]
rs12044903	1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12045050	1.00[EUR][1000 genomes]
rs12045953	0.89[CHB][hapmap];0.93[CHD][hapmap]
rs12046425	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12046511	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12046515	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12047809	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12047899	0.82[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12048193	1.00[EUR][1000 genomes]
rs12048740	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12048861	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12049111	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1389745	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1389746	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1389747	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1389748	1.00[AMR][1000 genomes]
rs17008639	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17008644	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17008646	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17008649	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17008667	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17008670	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17008680	1.00[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs182872	0.82[JPT][hapmap];1.00[EUR][1000 genomes]
rs1874115	0.89[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[ASN][1000 genomes]
rs1874116	0.89[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[ASN][1000 genomes]
rs1874117	0.89[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[ASN][1000 genomes]
rs1874118	0.95[ASN][1000 genomes]
rs1874123	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1982894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1982895	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2067632	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2067633	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2270534	0.82[ASN][1000 genomes]
rs2270535	0.89[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2275574	0.82[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2642446	0.82[JPT][hapmap]
rs28525291	1.00[ASN][1000 genomes]
rs337137	1.00[EUR][1000 genomes]
rs337140	0.82[JPT][hapmap];1.00[EUR][1000 genomes]
rs337141	1.00[EUR][1000 genomes]
rs337144	1.00[EUR][1000 genomes]
rs35297838	0.82[JPT][hapmap]
rs371348	0.86[CHD][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs3767324	1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3795535	0.93[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3806326	1.00[ASN][1000 genomes]
rs3806328	1.00[ASN][1000 genomes]
rs3820350	0.82[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3820353	0.82[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3820357	1.00[ASN][1000 genomes]
rs3902885	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4124596	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs419746	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4480363	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs449699	1.00[EUR][1000 genomes]
rs453079	0.86[CHD][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs57187572	0.95[ASN][1000 genomes]
rs58744613	0.95[ASN][1000 genomes]
rs58774365	0.95[ASN][1000 genomes]
rs60326124	0.95[ASN][1000 genomes]
rs6671579	0.89[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6687366	0.89[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs67065803	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67358577	0.97[ASN][1000 genomes]
rs67889619	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72470443	1.00[ASN][1000 genomes]
rs72470444	1.00[ASN][1000 genomes]
rs72470571	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72470575	1.00[ASN][1000 genomes]
rs72470581	1.00[ASN][1000 genomes]
rs72470584	1.00[ASN][1000 genomes]
rs72470587	0.95[ASN][1000 genomes]
rs72470600	0.82[ASN][1000 genomes]
rs72472377	1.00[EUR][1000 genomes]
rs72472379	1.00[EUR][1000 genomes]
rs72472380	1.00[EUR][1000 genomes]
rs72472383	1.00[EUR][1000 genomes]
rs72472384	1.00[EUR][1000 genomes]
rs72472389	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72472390	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72472391	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72472392	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72472394	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72472398	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72473905	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72473913	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs953970	0.89[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[ASN][1000 genomes]
rs9970128	0.95[ASN][1000 genomes]
rs9970130	0.95[ASN][1000 genomes]
rs9970393	0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9970394	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.95[ASN][1000 genomes]
rs9970623	0.95[ASN][1000 genomes]

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220922800-220959600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr1:220922800-220959600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr1:220925000-220959400	Weak transcription	Brain Angular Gyrus	brain
4	chr1:220930000-220959600	Weak transcription	Psoas Muscle	Psoas
5	chr1:220930400-220959600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:220931200-220959000	Weak transcription	Brain Substantia Nigra	brain
7	chr1:220936200-220959600	Weak transcription	A549	lung
8	chr1:220939000-220960400	Weak transcription	Small Intestine	intestine
9	chr1:220943000-220959000	Strong transcription	Fetal Intestine Large	intestine
10	chr1:220944200-220959200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr1:220944200-220959400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:220944200-220959400	Weak transcription	Fetal Kidney	kidney
13	chr1:220944200-220959600	Weak transcription	NHLF	lung
14	chr1:220944200-220959800	Weak transcription	Gastric	stomach
15	chr1:220944400-220959000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr1:220944400-220959200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr1:220944400-220959400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr1:220944400-220959400	Weak transcription	Colonic Mucosa	Colon
19	chr1:220944400-220959400	Weak transcription	Right Ventricle	heart
20	chr1:220945800-220959200	Weak transcription	Colon Smooth Muscle	Colon
21	chr1:220950200-220959200	Weak transcription	Brain Cingulate Gyrus	brain
22	chr1:220950400-220959400	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr1:220950600-220959000	Weak transcription	Fetal Heart	heart
24	chr1:220950600-220959400	Weak transcription	Right Atrium	heart
25	chr1:220953200-220959600	Weak transcription	Lung	lung
26	chr1:220953800-220959200	Weak transcription	Ovary	ovary
27	chr1:220956600-220959200	Strong transcription	Fetal Intestine Small	intestine
28	chr1:220956800-220959400	Weak transcription	Placenta	Placenta
29	chr1:220956800-220959600	Enhancers	Hela-S3	cervix
30	chr1:220957000-220959400	Weak transcription	Pancreas	Pancrea
31	chr1:220957000-220959600	Weak transcription	Aorta	Aorta
32	chr1:220957200-220959200	Weak transcription	Fetal Stomach	stomach
33	chr1:220957200-220959400	Weak transcription	Spleen	Spleen
34	chr1:220957400-220959200	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr1:220957800-220959200	Weak transcription	Duodenum Mucosa	Duodenum
36	chr1:220957800-220959200	Weak transcription	Fetal Lung	lung
37	chr1:220957800-220959200	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr1:220957800-220959400	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr1:220958000-220959200	Weak transcription	Stomach Smooth Muscle	stomach
40	chr1:220958000-220959400	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr1:220958000-220959600	Enhancers	Liver	Liver
42	chr1:220958200-220959000	Enhancers	Primary neutrophils fromperipheralblood	blood
43	chr1:220958200-220959000	Enhancers	Adipose Nuclei	Adipose
44	chr1:220958200-220959200	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr1:220958200-220959200	Enhancers	Monocytes-CD14+_RO01746	blood
46	chr1:220958200-220959400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr1:220958200-220959400	Enhancers	Primary monocytes fromperipheralblood	blood
48	chr1:220958200-220959400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr1:220958200-220959800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr1:220958200-220959800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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