Variant report

Variant	rs7469302
Chromosome Location	chr9:72510869-72510870
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72505375..72507864-chr9:72508984..72510952,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11140716	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11140750	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12379253	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13283032	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13284442	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13295978	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2871283	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34702508	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35822389	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7022971	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7027129	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7038189	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs766002	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7852049	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050920	chr9:72345297-72579301	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831611	chr9:72361905-72512134	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv831612	chr9:72473778-72634253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv466416	chr9:72479046-72513240	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv614581	chr9:72479046-72513240	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv893439	chr9:72500956-72568962	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72500800-72512800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr9:72501200-72512600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:72501800-72513000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:72502800-72512600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr9:72502800-72512600	Weak transcription	HMEC	breast
6	chr9:72508200-72512600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:72508200-72512600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr9:72508600-72512800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr9:72508800-72512600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr9:72509000-72512600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:72509000-72512600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr9:72509200-72511000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr9:72509800-72512400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:72509800-72512600	Weak transcription	NHDF-Ad	bronchial
15	chr9:72509800-72512800	Weak transcription	NHLF	lung
16	chr9:72509800-72513000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:72509800-72514000	Weak transcription	Brain Anterior Caudate	brain
18	chr9:72510200-72512400	Weak transcription	A549	lung
19	chr9:72510200-72512400	Weak transcription	Osteobl	bone
20	chr9:72510200-72512600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr9:72510200-72513400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:72510400-72512600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr9:72510600-72512800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr9:72510800-72511000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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