Variant report

Variant	rs746984
Chromosome Location	chr6:150514004-150514005
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10457859	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12191405	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12201610	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12202328	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs12211097	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12211587	0.86[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59114788	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6907224	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9478557	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9479904	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9479919	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs746984	SAMD5	cis	cerebellum	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150499600-150519600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:150506600-150515600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:150508400-150517000	Weak transcription	K562	blood
4	chr6:150510600-150518000	Weak transcription	Psoas Muscle	Psoas
5	chr6:150510800-150514800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:150512600-150514600	Weak transcription	Right Atrium	heart
7	chr6:150513400-150514200	Weak transcription	Fetal Heart	heart
8	chr6:150513600-150517200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:150513800-150514200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:150513800-150516800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:150513800-150517000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:150513800-150517000	Weak transcription	NHEK	skin
13	chr6:150514000-150514200	Enhancers	Left Ventricle	heart
14	chr6:150514000-150514800	Weak transcription	Lung	lung
15	chr6:150514000-150517000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:150514000-150517000	Weak transcription	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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