Variant report

Variant	rs74768511
Chromosome Location	chr20:23638989-23638990
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr20:23638862-23643208	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000225056	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491876	chr20:23436633-24031374	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv3341096	chr20:23638652-23642850	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23622800-23640000	Weak transcription	Stomach Mucosa	stomach
2	chr20:23633000-23639400	Enhancers	HepG2	liver
3	chr20:23635600-23641600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr20:23636800-23640600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr20:23636800-23640800	Weak transcription	Aorta	Aorta
6	chr20:23637000-23639200	Weak transcription	Psoas Muscle	Psoas
7	chr20:23637000-23640600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr20:23637200-23639000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr20:23637200-23640000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr20:23637200-23640600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr20:23637200-23640800	Weak transcription	Fetal Muscle Leg	muscle
12	chr20:23637200-23641000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr20:23637200-23641600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr20:23637200-23643600	Weak transcription	Right Atrium	heart
15	chr20:23637200-23660000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr20:23637400-23639000	Weak transcription	Fetal Lung	lung
17	chr20:23637400-23639400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr20:23637400-23640800	Weak transcription	Fetal Muscle Trunk	muscle
19	chr20:23637400-23641000	Weak transcription	Esophagus	oesophagus
20	chr20:23637800-23644200	Enhancers	Fetal Intestine Large	intestine
21	chr20:23638000-23640200	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr20:23638200-23639200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr20:23638200-23640000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr20:23638200-23640600	Weak transcription	Adipose Nuclei	Adipose
25	chr20:23638200-23642200	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr20:23638400-23639400	Enhancers	HUVEC	blood vessel
27	chr20:23638400-23644200	Enhancers	Fetal Intestine Small	intestine
28	chr20:23638600-23639000	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr20:23638600-23640200	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr20:23638600-23641800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr20:23638600-23642000	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr20:23638800-23639200	Enhancers	Skeletal Muscle Female	skeletal muscle

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