Variant report

Variant	rs7478285
Chromosome Location	chr10:25818933-25818934
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25814198..25816467-chr10:25817309..25819752,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10047266	1.00[CEU][hapmap];0.96[MEX][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1029179	0.80[ASN][1000 genomes]
rs10508700	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10741093	1.00[CEU][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10828818	0.81[JPT][hapmap]
rs1329252	0.92[CEU][hapmap];0.91[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1335199	0.81[JPT][hapmap]
rs1335200	0.81[JPT][hapmap]
rs1536836	0.85[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs1536837	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1981117	0.81[JPT][hapmap]
rs3923088	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4097490	0.84[CHB][hapmap];0.82[ASN][1000 genomes]
rs4747523	0.95[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs4747524	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4747530	0.81[JPT][hapmap]
rs4749038	0.89[CHB][hapmap];0.81[ASN][1000 genomes]
rs4749040	0.89[ASN][1000 genomes]
rs4749041	0.91[JPT][hapmap]
rs5001528	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6482488	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6482489	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7068743	0.94[CHD][hapmap];0.81[GIH][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs7072700	0.85[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7082952	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs7090998	0.84[JPT][hapmap]
rs7091908	0.85[JPT][hapmap]
rs7100629	0.81[JPT][hapmap]
rs7919640	0.81[JPT][hapmap]
rs943985	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9919420	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7478285	GPR158	cis	parietal	SCAN
rs7478285	MLLT10	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25812800-25824200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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