Variant report

Variant	rs7497610
Chromosome Location	chr15:79174872-79174873
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:79173489..79175037-chr15:79197852..79199934,2	MCF-7	breast:
2	chr15:79152585..79155864-chr15:79171888..79174971,4	K562	blood:
3	chr15:79166327..79167939-chr15:79173370..79175440,2	MCF-7	breast:
4	chr15:79169002..79171871-chr15:79173579..79175748,2	MCF-7	breast:
5	chr15:79172340..79175798-chr15:79183507..79185842,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185787	Chromatin interaction

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10444811	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs10519215	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs10519216	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs10519217	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs10519219	1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[TSI][hapmap];0.90[EUR][1000 genomes]
rs11857042	0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12050510	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs12050511	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs12050636	0.98[EUR][1000 genomes]
rs12438191	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12438433	1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[TSI][hapmap];0.90[EUR][1000 genomes]
rs12439583	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs12440205	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs12443105	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs12592618	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12911969	0.80[CHB][hapmap]
rs12916055	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1435163	0.98[EUR][1000 genomes]
rs16970194	1.00[EUR][1000 genomes]
rs16970223	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16970227	0.90[EUR][1000 genomes]
rs16970233	0.90[EUR][1000 genomes]
rs16970242	0.90[EUR][1000 genomes]
rs16970244	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1836556	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs2289691	0.88[EUR][1000 genomes]
rs2289700	0.84[CHD][hapmap]
rs34866535	0.98[EUR][1000 genomes]
rs4622479	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4624135	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4778738	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4778740	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4778909	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MKK][hapmap];0.81[TSI][hapmap];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs56272008	1.00[EUR][1000 genomes]
rs56281795	0.98[EUR][1000 genomes]
rs56343754	0.82[EUR][1000 genomes]
rs56687292	0.96[EUR][1000 genomes]
rs58848937	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59312571	0.98[EUR][1000 genomes]
rs59735519	0.98[EUR][1000 genomes]
rs60634495	0.89[EUR][1000 genomes]
rs62011055	0.85[EUR][1000 genomes]
rs62011056	0.85[EUR][1000 genomes]
rs62013160	0.98[EUR][1000 genomes]
rs62013184	0.98[EUR][1000 genomes]
rs62013185	0.90[EUR][1000 genomes]
rs62013186	0.98[EUR][1000 genomes]
rs62013188	0.90[EUR][1000 genomes]
rs62013189	0.90[EUR][1000 genomes]
rs62013191	0.90[EUR][1000 genomes]
rs62013192	0.90[EUR][1000 genomes]
rs62013193	0.85[EUR][1000 genomes]
rs62013196	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7165139	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7171539	0.98[EUR][1000 genomes]
rs7174727	0.84[CEU][hapmap]
rs7179763	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs734287	0.80[CHB][hapmap]
rs7402286	0.80[CHB][hapmap]
rs8025870	0.85[EUR][1000 genomes]
rs8026077	0.85[EUR][1000 genomes]
rs8027635	1.00[EUR][1000 genomes]
rs8028352	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8029496	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs8031280	0.98[EUR][1000 genomes]
rs8032867	1.00[EUR][1000 genomes]
rs8035028	0.89[EUR][1000 genomes]
rs8035305	0.89[EUR][1000 genomes]
rs8037651	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8039140	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8039144	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8042187	0.85[EUR][1000 genomes]
rs892787	0.80[CHB][hapmap]
rs9806693	0.80[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv904432	chr15:79066932-79175813	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79167000-79179200	Weak transcription	Esophagus	oesophagus
2	chr15:79167200-79178200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:79167800-79183800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:79169400-79176400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:79169800-79180000	Weak transcription	Gastric	stomach
6	chr15:79170200-79187000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr15:79170400-79177200	Weak transcription	Colonic Mucosa	Colon
8	chr15:79170400-79198600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr15:79170600-79176000	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr15:79170600-79182400	Weak transcription	Aorta	Aorta
11	chr15:79170600-79183200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr15:79170800-79178200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
13	chr15:79170800-79192400	Weak transcription	Stomach Mucosa	stomach
14	chr15:79171000-79177200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr15:79171000-79177200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr15:79171000-79179000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr15:79171200-79175200	Genic enhancers	Muscle Satellite Cultured Cells	--
18	chr15:79171200-79199600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
19	chr15:79171200-79199800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr15:79171200-79215600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr15:79171400-79175000	Enhancers	Pancreatic Islets	Pancreatic Islet
22	chr15:79171600-79180400	Weak transcription	Small Intestine	intestine
23	chr15:79171600-79199600	Strong transcription	H1 Cell Line	embryonic stem cell
24	chr15:79171600-79200400	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr15:79171800-79178000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
26	chr15:79171800-79207800	Strong transcription	Fetal Thymus	thymus
27	chr15:79172000-79175200	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr15:79172000-79175200	Strong transcription	Dnd41	blood
29	chr15:79172000-79178600	Weak transcription	Spleen	Spleen
30	chr15:79172000-79185200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr15:79172000-79200200	Strong transcription	HUVEC	blood vessel
32	chr15:79172000-79202800	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr15:79172200-79175000	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr15:79172200-79175800	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr15:79172200-79176200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr15:79172200-79176400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr15:79172200-79179600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr15:79172200-79197600	Strong transcription	Placenta	Placenta
39	chr15:79172200-79199600	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr15:79172200-79200200	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr15:79172200-79207000	Strong transcription	Primary B cells from peripheral blood	blood
42	chr15:79172400-79177200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr15:79172400-79177200	Weak transcription	Brain Substantia Nigra	brain
44	chr15:79172400-79200000	Strong transcription	Fetal Intestine Large	intestine
45	chr15:79172400-79216200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr15:79172600-79176200	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr15:79172600-79177200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr15:79172600-79182400	Strong transcription	Primary B cells from cord blood	blood
49	chr15:79172600-79201800	Strong transcription	Duodenum Mucosa	Duodenum
50	chr15:79172600-79207400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links