Variant report

Variant	rs750903
Chromosome Location	chr11:76454849-76454850
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76445009..76450493-chr11:76452594..76458852,7	K562	blood:
2	chr11:76454654..76458636-chr11:76475295..76479345,4	MCF-7	breast:
3	chr11:76454033..76456801-chr11:76571027..76573144,2	K562	blood:
4	chr11:76451295..76455303-chr11:76456358..76459104,3	K562	blood:
5	chr11:76446403..76452318-chr11:76452779..76457589,9	K562	blood:

Variant related genes	Relation type
ENSG00000078124	Chromatin interaction
ENSG00000254632	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11823159	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11824342	1.00[AMR][1000 genomes]
rs17812296	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1810781	chr11:76311021-76464814	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv1850014	chr11:76384895-76464814	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv976471	chr11:76435262-76459660	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv430404	chr11:76436952-76462852	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76433400-76456400	Weak transcription	Right Atrium	heart
2	chr11:76446400-76463200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:76447400-76458600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:76448800-76456400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:76449200-76458000	Weak transcription	Fetal Brain Male	brain
6	chr11:76449400-76455600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:76449400-76455600	Weak transcription	A549	lung
8	chr11:76449400-76458600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:76450000-76456600	Weak transcription	Gastric	stomach
10	chr11:76450400-76455600	Weak transcription	Placenta	Placenta
11	chr11:76450400-76463400	Weak transcription	Right Ventricle	heart
12	chr11:76450600-76455400	Weak transcription	Fetal Heart	heart
13	chr11:76452600-76456400	Weak transcription	Colonic Mucosa	Colon
14	chr11:76452800-76455400	Weak transcription	Adipose Nuclei	Adipose
15	chr11:76453600-76455000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:76454000-76455000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr11:76454000-76456200	Enhancers	NHDF-Ad	bronchial
18	chr11:76454000-76456400	Enhancers	K562	blood
19	chr11:76454000-76457000	Enhancers	Fetal Muscle Leg	muscle
20	chr11:76454400-76455800	Enhancers	Fetal Muscle Trunk	muscle
21	chr11:76454400-76456400	Enhancers	Duodenum Mucosa	Duodenum
22	chr11:76454400-76457200	Enhancers	Stomach Mucosa	stomach
23	chr11:76454400-76457600	Enhancers	Fetal Intestine Large	intestine
24	chr11:76454600-76455600	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr11:76454600-76457400	Enhancers	Fetal Intestine Small	intestine
26	chr11:76454800-76455000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:76454800-76455800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr11:76454800-76458600	Weak transcription	Spleen	Spleen
29	chr11:76454800-76459000	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr11:76454800-76461000	Weak transcription	Hela-S3	cervix

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