Variant report

Variant	rs751211
Chromosome Location	chr11:70998386-70998387
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:70992890..70998671-chr11:71006581..71012132,9	MCF-7	breast:
2	chr11:70959273..70962056-chr11:70997227..71000001,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11603698	1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs11604196	0.81[EUR][1000 genomes]
rs35853657	0.81[EUR][1000 genomes]
rs57565284	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59352428	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60028995	1.00[EUR][1000 genomes]
rs60717420	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70992000-70999600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr11:70993000-70999200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:70995200-70998800	Enhancers	Fetal Muscle Leg	muscle
4	chr11:70995600-70998800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:70996000-70998600	Enhancers	Pancreas	Pancrea
6	chr11:70996400-70998600	Enhancers	Esophagus	oesophagus
7	chr11:70997000-70998600	Enhancers	Fetal Kidney	kidney
8	chr11:70997000-70999600	Enhancers	NHDF-Ad	bronchial
9	chr11:70997200-70998600	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr11:70997200-70999200	Enhancers	NHLF	lung
11	chr11:70997400-70998600	Enhancers	Liver	Liver
12	chr11:70997400-70998600	Enhancers	Lung	lung
13	chr11:70997400-70998800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr11:70997400-70998800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:70997400-70999000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:70997400-70999400	Enhancers	Osteobl	bone
17	chr11:70997400-70999600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:70997400-70999600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:70997600-70998600	Enhancers	Brain Anterior Caudate	brain
20	chr11:70997600-70998800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:70997600-70998800	Flanking Active TSS	NHEK	skin
22	chr11:70997800-70998400	Enhancers	Fetal Brain Male	brain
23	chr11:70997800-70998400	Enhancers	Gastric	stomach
24	chr11:70997800-70998400	Enhancers	Placenta Amnion	Placenta Amnion
25	chr11:70997800-70998600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr11:70997800-70998600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr11:70997800-70998600	Enhancers	Brain Angular Gyrus	brain
28	chr11:70997800-70998600	Enhancers	Brain Hippocampus Middle	brain
29	chr11:70997800-70998600	Enhancers	Brain Substantia Nigra	brain
30	chr11:70997800-70998600	Enhancers	Colonic Mucosa	Colon
31	chr11:70997800-70998600	Flanking Active TSS	Stomach Smooth Muscle	stomach
32	chr11:70997800-70998600	Bivalent Enhancer	HepG2	liver
33	chr11:70997800-70998800	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr11:70997800-70998800	Enhancers	Adipose Nuclei	Adipose
35	chr11:70997800-70998800	Enhancers	Brain Cingulate Gyrus	brain
36	chr11:70997800-70998800	Enhancers	Duodenum Mucosa	Duodenum
37	chr11:70997800-70998800	Enhancers	Fetal Lung	lung
38	chr11:70997800-70998800	Enhancers	Fetal Muscle Trunk	muscle
39	chr11:70997800-70998800	Enhancers	Fetal Stomach	stomach
40	chr11:70998000-70998400	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr11:70998000-70998400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr11:70998000-70998600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr11:70998000-70998600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr11:70998000-70998600	Enhancers	Duodenum Smooth Muscle	Duodenum
45	chr11:70998000-70998600	Enhancers	Sigmoid Colon	Sigmoid Colon
46	chr11:70998000-70998600	Enhancers	Spleen	Spleen
47	chr11:70998000-70998800	Enhancers	Rectal Mucosa Donor 29	rectum
48	chr11:70998000-70999200	Enhancers	HSMM	muscle
49	chr11:70998000-70999800	Enhancers	Muscle Satellite Cultured Cells	--
50	chr11:70998200-70998400	Enhancers	Fetal Intestine Small	intestine

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