Variant report

Variant	rs7512221
Chromosome Location	chr1:220601623-220601624
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11118554	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11576868	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11582548	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12562686	0.85[JPT][hapmap]
rs12568969	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs1361256	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1933881	0.90[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs6685446	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs6686532	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7516373	0.85[JPT][hapmap]
rs7522502	0.85[JPT][hapmap]
rs7525770	0.87[ASW][hapmap];0.85[LWK][hapmap]
rs7530302	0.85[JPT][hapmap]

Variant related diseases (count:1)

Disease	PMID	Source
Fat distribution (HIV)	21897333	GWAS catalog

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220598800-220603400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:220599800-220603200	Weak transcription	Placenta	Placenta
3	chr1:220600800-220603200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:220600800-220603400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:220601000-220603200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:220601000-220603400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:220601000-220603400	Weak transcription	HMEC	breast
8	chr1:220601000-220604800	Weak transcription	Adipose Nuclei	Adipose
9	chr1:220601200-220603400	Weak transcription	NHEK	skin
10	chr1:220601400-220602400	Weak transcription	Hela-S3	cervix

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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