Variant report

Variant	rs7513153
Chromosome Location	chr1:196110486-196110487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10801516	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10922034	0.94[ASN][1000 genomes]
rs10922035	0.94[ASN][1000 genomes]
rs12040221	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12041004	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12041804	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12562741	0.87[ASN][1000 genomes]
rs12565586	0.94[ASN][1000 genomes]
rs12567147	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16839499	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16839508	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59310826	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61471621	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61822084	0.94[ASN][1000 genomes]
rs61822088	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7536148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7538355	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7543048	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757765	chr1:195803764-196119454	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2758989	chr1:195803764-196119454	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv872948	chr1:195872295-196236425	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv470769	chr1:195901676-196187665	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv467339	chr1:195912579-196119310	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv548738	chr1:195912579-196119310	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv534209	chr1:196011881-196208885	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv872951	chr1:196027872-196166278	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196109800-196113400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:196110000-196111000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr1:196110000-196111400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:196110200-196111400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:196110400-196110800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:196110400-196112400	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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