Variant report

Variant	rs751357
Chromosome Location	chr3:138078155-138078156
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs1002766	0.92[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1092338	0.82[ASN][1000 genomes]
rs11710280	0.97[EUR][1000 genomes]
rs11713141	0.86[EUR][1000 genomes]
rs1199330	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs1199331	0.85[EUR][1000 genomes]
rs1199332	0.90[CHD][hapmap]
rs1199337	0.83[ASN][1000 genomes]
rs1199338	0.93[CHD][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs12107581	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12490350	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13324341	0.87[CHD][hapmap];0.82[ASN][1000 genomes]
rs1564407	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1564408	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1678440	0.83[ASN][1000 genomes]
rs1679147	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1720819	0.90[CHD][hapmap];0.83[ASN][1000 genomes]
rs1720828	0.90[CHD][hapmap]
rs185244	0.83[ASN][1000 genomes]
rs1904349	0.81[ASN][1000 genomes]
rs2054468	1.00[CEU][hapmap];0.92[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2061936	0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2169973	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2293252	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs253665	0.84[CHD][hapmap]
rs35219044	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3755751	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3773752	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3773758	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3773759	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3816730	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs40593	0.87[CHD][hapmap]
rs4678260	0.96[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4678261	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4678407	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4678408	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.85[TSI][hapmap];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4678409	1.00[CEU][hapmap];0.84[CHB][hapmap];0.90[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.81[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4678410	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4678411	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4678412	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4678415	0.96[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4678417	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6439804	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6439805	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6439806	0.92[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6439807	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67559768	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6766859	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6769236	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6769261	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6782181	0.88[CEU][hapmap];0.90[CHD][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];0.81[MEX][hapmap];0.92[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6782449	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6784989	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6789235	0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6790398	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6802211	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6807945	0.84[CHD][hapmap]
rs730158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs731632	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7615658	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7626388	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7626424	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7637666	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7639809	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7639850	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7642400	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9289559	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs940233	0.81[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9825697	0.89[EUR][1000 genomes]
rs9834911	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9845672	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9846198	0.92[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9846223	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9854465	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9855722	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530056	chr3:137312356-138161861	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv877537	chr3:137979007-138215114	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv530057	chr3:138014877-138734390	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv528349	chr3:138025396-138132393	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv1796956	chr3:138051423-138122781	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv1848610	chr3:138051423-138133412	Bivalent Enhancer Genic enhancers Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138068400-138083000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:138068600-138084600	Weak transcription	Gastric	stomach
3	chr3:138068800-138093200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:138069200-138088200	Weak transcription	Fetal Lung	lung
5	chr3:138069400-138080600	Weak transcription	NHLF	lung
6	chr3:138070000-138096600	Weak transcription	Fetal Brain Male	brain
7	chr3:138070200-138086400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr3:138071000-138085600	Weak transcription	Brain Germinal Matrix	brain
9	chr3:138071200-138080800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:138071200-138082400	Weak transcription	Spleen	Spleen
11	chr3:138071200-138082800	Weak transcription	Esophagus	oesophagus
12	chr3:138071200-138096600	Weak transcription	Aorta	Aorta
13	chr3:138071600-138086600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:138071800-138083400	Weak transcription	Placenta	Placenta
15	chr3:138072600-138080000	Genic enhancers	HSMMtube	muscle
16	chr3:138073800-138084600	Weak transcription	Fetal Intestine Small	intestine
17	chr3:138074200-138095600	Enhancers	Fetal Heart	heart
18	chr3:138074400-138078800	Weak transcription	Fetal Brain Female	brain
19	chr3:138074400-138079400	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr3:138074600-138080400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:138074800-138079800	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr3:138074800-138089800	Enhancers	Brain Cingulate Gyrus	brain
23	chr3:138075000-138086400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr3:138075000-138090000	Enhancers	Brain Anterior Caudate	brain
25	chr3:138075200-138079400	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr3:138075400-138080800	Enhancers	Psoas Muscle	Psoas
27	chr3:138075400-138087400	Enhancers	Right Atrium	heart
28	chr3:138075600-138078400	Enhancers	Ovary	ovary
29	chr3:138075600-138079400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr3:138075600-138080200	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr3:138075600-138080600	Enhancers	Fetal Muscle Trunk	muscle
32	chr3:138075600-138081200	Enhancers	Adipose Nuclei	Adipose
33	chr3:138075600-138081600	Enhancers	Brain Hippocampus Middle	brain
34	chr3:138075600-138082800	Enhancers	Left Ventricle	heart
35	chr3:138075600-138089400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
36	chr3:138076000-138086400	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr3:138076000-138108200	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr3:138076200-138079600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr3:138076200-138080400	Weak transcription	Pancreas	Pancrea
40	chr3:138076200-138080800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr3:138076400-138078400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr3:138076400-138080400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr3:138076400-138081000	Genic enhancers	HSMM	muscle
44	chr3:138076400-138082400	Enhancers	Brain Inferior Temporal Lobe	brain
45	chr3:138076600-138078800	Weak transcription	Osteobl	bone
46	chr3:138076800-138079000	Enhancers	Colon Smooth Muscle	Colon
47	chr3:138077000-138078200	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr3:138077000-138083000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr3:138077200-138078800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr3:138077400-138078200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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