Variant report
| Variant | rs7513644 |
|---|---|
| Chromosome Location | chr1:197219418-197219419 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-CFHR5-4 | chr1:197219376-197219420 | NONHSAT008619 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs17514584 | 1.00[AMR][1000 genomes] |
| rs17514591 | 1.00[AMR][1000 genomes] |
| rs17514606 | 1.00[AMR][1000 genomes] |
| rs17514732 | 1.00[AMR][1000 genomes] |
| rs17514781 | 1.00[AMR][1000 genomes] |
| rs17514795 | 1.00[AMR][1000 genomes] |
| rs17514802 | 1.00[AMR][1000 genomes] |
| rs17514816 | 1.00[AMR][1000 genomes] |
| rs17549514 | 1.00[AMR][1000 genomes] |
| rs17549540 | 1.00[AMR][1000 genomes] |
| rs17549547 | 1.00[AMR][1000 genomes] |
| rs17549582 | 1.00[AMR][1000 genomes] |
| rs17549596 | 1.00[AMR][1000 genomes] |
| rs17549657 | 1.00[AMR][1000 genomes] |
| rs17549671 | 1.00[AMR][1000 genomes] |
| rs17549818 | 1.00[AMR][1000 genomes] |
| rs17549859 | 1.00[AMR][1000 genomes] |
| rs17549873 | 1.00[AMR][1000 genomes] |
| rs35897746 | 1.00[AMR][1000 genomes] |
| rs56912014 | 1.00[AMR][1000 genomes] |
| rs59560396 | 1.00[AMR][1000 genomes] |
| rs59820773 | 1.00[AMR][1000 genomes] |
| rs5999 | 1.00[AMR][1000 genomes] |
| rs6000 | 1.00[AMR][1000 genomes] |
| rs60769813 | 1.00[AMR][1000 genomes] |
| rs61172533 | 1.00[AMR][1000 genomes] |
| rs61249253 | 1.00[AMR][1000 genomes] |
| rs62624968 | 1.00[AMR][1000 genomes] |
| rs6428388 | 1.00[AMR][1000 genomes] |
| rs6669374 | 1.00[AMR][1000 genomes] |
| rs6669388 | 1.00[AMR][1000 genomes] |
| rs6675840 | 1.00[AMR][1000 genomes] |
| rs6700604 | 1.00[AMR][1000 genomes] |
| rs6702338 | 1.00[AMR][1000 genomes] |
| rs6702739 | 1.00[AMR][1000 genomes] |
| rs7520405 | 1.00[AMR][1000 genomes] |
| rs7528827 | 1.00[AMR][1000 genomes] |
| rs7534439 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv528460 | chr1:196542567-197446702 | Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
| 2 | nsv873072 | chr1:197079671-197221248 | Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv873073 | chr1:197107074-197221248 | Flanking Active TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
