Variant report

Variant	rs7514067
Chromosome Location	chr1:94404486-94404487
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr1:94403983-94404505	MCF-7	breast:	n/a	chr1:94404220-94404229

Variant related genes	Relation type
ENSG00000233129	TF binding region

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10874804	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10874805	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11165027	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11165028	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11165029	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11165032	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11805379	1.00[ASN][1000 genomes]
rs11808380	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12059028	1.00[ASN][1000 genomes]
rs12062272	1.00[ASN][1000 genomes]
rs12062925	1.00[ASN][1000 genomes]
rs12069476	1.00[ASN][1000 genomes]
rs12076074	1.00[ASN][1000 genomes]
rs12078134	1.00[ASN][1000 genomes]
rs12080386	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12081399	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12090038	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12090230	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12094966	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17110374	1.00[ASN][1000 genomes]
rs17110608	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17110611	0.94[EUR][1000 genomes]
rs2234729	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4075342	1.00[ASN][1000 genomes]
rs41292667	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41292669	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41292671	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41292673	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4542218	1.00[ASN][1000 genomes]
rs57136451	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58790885	1.00[ASN][1000 genomes]
rs59444123	1.00[ASN][1000 genomes]
rs59545065	1.00[ASN][1000 genomes]
rs61750895	1.00[ASN][1000 genomes]
rs6541397	1.00[ASN][1000 genomes]
rs6680755	1.00[ASN][1000 genomes]
rs6686765	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6692306	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6701957	1.00[ASN][1000 genomes]
rs6702045	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6702064	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6704348	1.00[ASN][1000 genomes]
rs72965451	1.00[ASN][1000 genomes]
rs72967332	1.00[ASN][1000 genomes]
rs72967387	1.00[ASN][1000 genomes]
rs72969374	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7515991	1.00[ASN][1000 genomes]
rs7525516	1.00[ASN][1000 genomes]
rs7552401	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7555872	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516137	chr1:94404238-94504545	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94375600-94421200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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