Variant report

Variant	rs7514606
Chromosome Location	chr1:211191730-211191731
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211079490..211081106-chr1:211190726..211193541,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs11119654	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs11119668	0.94[ASN][1000 genomes]
rs11806852	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12021704	0.85[CHB][hapmap]
rs12022715	0.92[ASN][1000 genomes]
rs12022739	0.92[ASN][1000 genomes]
rs12025525	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12026311	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12026374	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12027535	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12028941	0.86[CHB][hapmap];0.98[CHD][hapmap];0.85[GIH][hapmap]
rs12030715	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12036999	0.86[CHB][hapmap];0.98[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12039302	0.89[ASN][1000 genomes]
rs12042686	0.91[YRI][hapmap];0.90[AFR][1000 genomes]
rs12043937	0.89[ASN][1000 genomes]
rs12043952	0.87[ASN][1000 genomes]
rs12046391	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12070402	0.92[ASN][1000 genomes]
rs12406562	0.89[ASN][1000 genomes]
rs12407609	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1501544	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1501545	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1501548	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1501549	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1501550	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs1501555	0.82[CHD][hapmap];0.82[JPT][hapmap]
rs1532682	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2047708	0.94[YRI][hapmap]
rs2358210	0.80[ASN][1000 genomes]
rs4570464	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4575146	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56999636	0.90[ASN][1000 genomes]
rs57045219	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs57179129	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57655345	0.83[ASN][1000 genomes]
rs58255417	0.94[ASN][1000 genomes]
rs61848562	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61848568	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61848992	0.80[ASN][1000 genomes]
rs61849000	0.85[ASN][1000 genomes]
rs61849015	0.89[ASN][1000 genomes]
rs61849024	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61850228	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6540636	0.95[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.89[YRI][hapmap];0.85[ASN][1000 genomes]
rs6540638	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6540648	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.94[ASN][1000 genomes]
rs6659135	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6666287	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6666342	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6675213	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6678568	0.95[CHB][hapmap];0.90[JPT][hapmap];0.91[LWK][hapmap];0.89[YRI][hapmap];0.82[ASN][1000 genomes]
rs6680997	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.93[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6688920	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6689715	0.92[ASN][1000 genomes]
rs7515316	0.84[ASN][1000 genomes]
rs7518841	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7523929	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7524268	0.90[AFR][1000 genomes]
rs7526579	0.87[LWK][hapmap];0.90[AFR][1000 genomes]
rs7551412	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7553997	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7554723	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7514606	ELK4	cis	parietal	SCAN
rs7514606	C1orf74	cis	parietal	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211181800-211193800	Weak transcription	Brain Anterior Caudate	brain
2	chr1:211182800-211228600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:211184800-211198600	Weak transcription	Brain Hippocampus Middle	brain
4	chr1:211185200-211194000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:211185400-211191800	Weak transcription	HSMMtube	muscle
6	chr1:211187000-211198200	Weak transcription	Brain Angular Gyrus	brain
7	chr1:211187200-211191800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr1:211187400-211191800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:211187600-211198200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr1:211189200-211193000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr1:211189600-211191800	Weak transcription	HSMM	muscle
12	chr1:211190200-211191800	Weak transcription	Brain Substantia Nigra	brain
13	chr1:211190600-211192000	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr1:211190600-211198800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr1:211190800-211191800	Weak transcription	A549	lung
16	chr1:211191000-211192400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr1:211191600-211192200	Weak transcription	Brain Cingulate Gyrus	brain

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