Variant report
| Variant | rs7515193 |
|---|---|
| Chromosome Location | chr1:71303612-71303613 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-PTGER3-6 | chr1:71303599-71303905 | expReg_chr1_9991_- |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1327452 | 0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1327462 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1409979 | 0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1409980 | 0.80[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs1409986 | 1.00[CEU][hapmap];0.88[EUR][1000 genomes] |
| rs1414069 | 0.85[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs1576055 | 1.00[CEU][hapmap] |
| rs1591385 | 0.85[CEU][hapmap];0.95[EUR][1000 genomes] |
| rs1854149 | 0.92[AFR][1000 genomes];0.94[EUR][1000 genomes] |
| rs2209747 | 0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2225110 | 0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2257713 | 0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2258725 | 0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2782785 | 0.93[EUR][1000 genomes] |
| rs3120156 | 0.93[EUR][1000 genomes] |
| rs3131375 | 0.85[CEU][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.93[EUR][1000 genomes] |
| rs4650092 | 1.00[CEU][hapmap] |
| rs6424405 | 0.85[CEU][hapmap] |
| rs6424406 | 1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7525012 | 0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7551638 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1845198 | chr1:71274759-71514969 | Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | esv2763076 | chr1:71302563-71314457 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
