Variant report

Variant	rs7515224
Chromosome Location	chr1:93411668-93411669
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:93405502..93407115-chr1:93411210..93413800,2	K562	blood:
2	chr1:93379243..93381867-chr1:93410629..93413052,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10157869	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs10159030	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs13373836	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13374961	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13374962	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17131669	1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17131670	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17131671	1.00[ASN][1000 genomes]
rs17131672	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17131673	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17131674	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4394666	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs59078677	1.00[ASN][1000 genomes]
rs60165854	1.00[ASN][1000 genomes]
rs60684469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61318253	1.00[ASN][1000 genomes]
rs7519363	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7539571	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7552766	1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9324345	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93400400-93416600	Weak transcription	Fetal Intestine Small	intestine
2	chr1:93400800-93421800	Weak transcription	Fetal Lung	lung
3	chr1:93405800-93412600	Enhancers	Brain Anterior Caudate	brain
4	chr1:93406200-93415200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:93406600-93413200	Weak transcription	HMEC	breast
6	chr1:93407000-93412200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr1:93407000-93412800	Enhancers	Primary B cells from peripheral blood	blood
8	chr1:93407200-93412200	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr1:93407600-93415400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:93407800-93412600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:93407800-93412600	Enhancers	Brain Cingulate Gyrus	brain
12	chr1:93408600-93412200	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr1:93408800-93411800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr1:93408800-93412200	Enhancers	Brain Angular Gyrus	brain
15	chr1:93408800-93412400	Enhancers	Primary T cells from cord blood	blood
16	chr1:93409000-93413200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr1:93409000-93415200	Weak transcription	A549	lung
18	chr1:93409000-93415400	Weak transcription	HSMMtube	muscle
19	chr1:93409200-93413200	Weak transcription	NHEK	skin
20	chr1:93409200-93415200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr1:93409200-93415200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr1:93409200-93415200	Weak transcription	Duodenum Mucosa	Duodenum
23	chr1:93409200-93421200	Weak transcription	Fetal Brain Female	brain
24	chr1:93409400-93415200	Weak transcription	Stomach Mucosa	stomach
25	chr1:93409400-93415200	Weak transcription	NHDF-Ad	bronchial
26	chr1:93409400-93415400	Weak transcription	Osteobl	bone
27	chr1:93409600-93426000	Weak transcription	Lung	lung
28	chr1:93410000-93412400	Enhancers	Liver	Liver
29	chr1:93410200-93412400	Enhancers	HepG2	liver
30	chr1:93410600-93414000	Enhancers	Brain Hippocampus Middle	brain
31	chr1:93410600-93415400	Weak transcription	NHLF	lung
32	chr1:93410600-93415600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr1:93410600-93415600	Weak transcription	Right Ventricle	heart
34	chr1:93410600-93425600	Weak transcription	Aorta	Aorta
35	chr1:93410600-93425800	Weak transcription	Right Atrium	heart
36	chr1:93410600-93426000	Weak transcription	Left Ventricle	heart
37	chr1:93410800-93412200	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr1:93410800-93412600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
39	chr1:93410800-93413800	Enhancers	Brain Substantia Nigra	brain
40	chr1:93410800-93415400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr1:93410800-93415800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr1:93410800-93416000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr1:93410800-93416600	Weak transcription	Thymus	Thymus
44	chr1:93411000-93415200	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr1:93411000-93422000	Weak transcription	Stomach Smooth Muscle	stomach
46	chr1:93411000-93425800	Weak transcription	Primary hematopoietic stem cells	blood
47	chr1:93411200-93415400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr1:93411200-93415400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr1:93411400-93413200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr1:93411400-93415200	Weak transcription	Primary monocytes fromperipheralblood	blood

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