Variant report

Variant	rs7519026
Chromosome Location	chr1:215206224-215206225
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11120457	1.00[ASN][1000 genomes]
rs11120466	0.96[AFR][1000 genomes]
rs1156732	1.00[ASN][1000 genomes]
rs11805210	0.89[AFR][1000 genomes]
rs11809041	0.83[AFR][1000 genomes]
rs11810831	0.87[AFR][1000 genomes]
rs12064317	1.00[ASN][1000 genomes]
rs12066755	1.00[ASN][1000 genomes]
rs12073570	1.00[ASN][1000 genomes]
rs12097900	1.00[ASN][1000 genomes]
rs12119060	1.00[ASN][1000 genomes]
rs1377174	1.00[ASN][1000 genomes]
rs1377176	1.00[ASN][1000 genomes]
rs1452611	1.00[ASN][1000 genomes]
rs1452613	1.00[ASN][1000 genomes]
rs1452614	1.00[ASN][1000 genomes]
rs1452615	1.00[ASN][1000 genomes]
rs1452616	1.00[ASN][1000 genomes]
rs1452617	1.00[ASN][1000 genomes]
rs1452618	1.00[ASN][1000 genomes]
rs1452619	1.00[ASN][1000 genomes]
rs1452621	1.00[ASN][1000 genomes]
rs1452622	1.00[ASN][1000 genomes]
rs1562993	1.00[ASN][1000 genomes]
rs1562994	1.00[ASN][1000 genomes]
rs1597846	1.00[ASN][1000 genomes]
rs1901622	1.00[ASN][1000 genomes]
rs2167687	1.00[ASN][1000 genomes]
rs2601626	1.00[ASN][1000 genomes]
rs2601627	1.00[ASN][1000 genomes]
rs2601628	1.00[ASN][1000 genomes]
rs2601629	1.00[ASN][1000 genomes]
rs2601632	1.00[ASN][1000 genomes]
rs2802646	1.00[ASN][1000 genomes]
rs2802652	1.00[ASN][1000 genomes]
rs2802653	1.00[ASN][1000 genomes]
rs2802655	1.00[ASN][1000 genomes]
rs2841576	1.00[ASN][1000 genomes]
rs2841578	1.00[ASN][1000 genomes]
rs2841582	1.00[ASN][1000 genomes]
rs2841584	1.00[ASN][1000 genomes]
rs2841585	1.00[ASN][1000 genomes]
rs2841586	1.00[ASN][1000 genomes]
rs2841589	1.00[ASN][1000 genomes]
rs2841590	1.00[ASN][1000 genomes]
rs28753797	1.00[ASN][1000 genomes]
rs56069026	0.91[AFR][1000 genomes]
rs58902795	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60894494	0.87[AFR][1000 genomes]
rs61255106	0.88[AFR][1000 genomes]
rs72731088	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72731089	0.88[EUR][1000 genomes]
rs7523487	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468105	chr1:215167236-215248417	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549182	chr1:215167236-215248417	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215177200-215211200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:215204800-215206600	Weak transcription	NHDF-Ad	bronchial
3	chr1:215205800-215207000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr1:215206000-215206800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:215206200-215206800	Enhancers	Osteobl	bone

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