Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1007512	0.96[ASN][1000 genomes]
rs10493552	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs10493553	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11162513	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11162567	0.86[CHB][hapmap];0.81[CHD][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs12036667	0.92[ASN][1000 genomes]
rs12041465	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];0.91[ASN][1000 genomes]
rs12563445	0.93[ASN][1000 genomes]
rs12565272	0.91[ASN][1000 genomes]
rs1526504	0.92[ASN][1000 genomes]
rs1526505	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.82[MEX][hapmap];0.96[MKK][hapmap];0.92[ASN][1000 genomes]
rs1526507	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1526513	0.93[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs17096272	0.93[ASN][1000 genomes]
rs17096289	0.86[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs1852347	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4949725	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6669192	0.92[YRI][hapmap]
rs7535534	0.80[ASN][1000 genomes]
rs941032	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871743	chr1:75235082-75714554	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3368999	chr1:75524762-75933220	Bivalent/Poised TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7520936	C1orf173	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:75539600-75545400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:75541200-75545000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:75541200-75545400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr1:75541200-75546000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr1:75541400-75547800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr1:75542600-75546000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr1:75543800-75546200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:75544000-75546400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr1:75544200-75546400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr1:75544400-75545200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr1:75544400-75545400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr1:75544400-75546200	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr1:75544600-75546000	Enhancers	H9 Cell Line	embryonic stem cell

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