Variant report
| Variant | rs752158 |
|---|---|
| Chromosome Location | chr7:138126534-138126535 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:138126108..138128101-chr7:138131992..138134050,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10225876 | 0.80[EUR][1000 genomes] |
| rs10246196 | 0.85[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10250362 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs10259728 | 0.81[AMR][1000 genomes] |
| rs10274356 | 0.80[ASN][1000 genomes] |
| rs12668679 | 0.85[EUR][1000 genomes] |
| rs12669629 | 0.90[ASN][1000 genomes] |
| rs13229601 | 0.89[ASN][1000 genomes] |
| rs17169596 | 0.85[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs17169597 | 0.85[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs2883142 | 0.80[AMR][1000 genomes] |
| rs34415266 | 0.80[ASN][1000 genomes] |
| rs4728435 | 0.87[CEU][hapmap] |
| rs4732315 | 0.81[CEU][hapmap] |
| rs4732316 | 0.92[CEU][hapmap] |
| rs4732317 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs55792279 | 0.84[AMR][1000 genomes] |
| rs55875241 | 0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs55924435 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs62491082 | 0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6467773 | 0.80[ASN][1000 genomes] |
| rs6960172 | 0.87[ASN][1000 genomes] |
| rs7786347 | 0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv34048 | chr7:137724092-138213119 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 35 gene(s) | inside rSNPs | diseases |
| 2 | nsv831153 | chr7:138078179-138265648 | Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| 3 | nsv970583 | chr7:138125511-138137818 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:138124400-138126800 | Weak transcription | Gastric | stomach |
| 2 | chr7:138125800-138127000 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
