Variant report

Variant	rs7522789
Chromosome Location	chr1:92678113-92678114
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1077783	0.91[EUR][1000 genomes]
rs11164423	0.91[EUR][1000 genomes]
rs11166127	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11166136	0.91[EUR][1000 genomes]
rs11166137	0.91[EUR][1000 genomes]
rs11166542	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs12070923	0.91[EUR][1000 genomes]
rs12071093	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs12073894	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs12077180	0.91[EUR][1000 genomes]
rs12078746	0.91[EUR][1000 genomes]
rs12090761	0.91[EUR][1000 genomes]
rs12098095	1.00[CEU][hapmap]
rs17131599	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17131621	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs35413685	0.91[EUR][1000 genomes]
rs4617457	0.91[EUR][1000 genomes]
rs56112620	1.00[EUR][1000 genomes]
rs56297403	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs56665661	0.91[EUR][1000 genomes]
rs57217458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57992264	0.91[EUR][1000 genomes]
rs59278612	0.81[AFR][1000 genomes]
rs60265386	0.84[AFR][1000 genomes]
rs60755573	0.84[AFR][1000 genomes]
rs61185080	0.83[AFR][1000 genomes]
rs61410146	0.83[AFR][1000 genomes]
rs6603970	0.91[EUR][1000 genomes]
rs6660858	1.00[CEU][hapmap]
rs6662381	0.91[EUR][1000 genomes]
rs6662565	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs6672838	1.00[CEU][hapmap]
rs6679419	1.00[EUR][1000 genomes]
rs6681027	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs6691918	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs6694248	1.00[EUR][1000 genomes]
rs6695475	1.00[CEU][hapmap]
rs72954776	1.00[EUR][1000 genomes]
rs72954787	1.00[EUR][1000 genomes]
rs72954791	1.00[EUR][1000 genomes]
rs72956803	0.91[EUR][1000 genomes]
rs72958703	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72958740	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs72958781	0.83[AFR][1000 genomes]
rs74102861	0.85[AMR][1000 genomes]
rs7519603	1.00[CEU][hapmap]
rs7520555	1.00[CEU][hapmap];0.92[YRI][hapmap]
rs7525174	0.86[AFR][1000 genomes]
rs7529971	1.00[CEU][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes]
rs7535181	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7542362	1.00[CEU][hapmap]
rs7542736	1.00[CEU][hapmap]
rs7546528	0.91[EUR][1000 genomes]
rs9661440	1.00[CEU][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012864	chr1:92067100-92827761	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv535029	chr1:92067100-92827761	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv530438	chr1:92091957-92827760	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv530046	chr1:92277460-92799794	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv871508	chr1:92478130-92781579	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv830592	chr1:92669282-92805629	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92677800-92678600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:92678000-92678200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr1:92678000-92678200	Enhancers	HSMMtube	muscle

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