Variant report
| Variant | rs7522887 |
|---|---|
| Chromosome Location | chr1:221435667-221435668 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs11118661 | 1.00[EUR][1000 genomes] |
| rs11118693 | 1.00[EUR][1000 genomes] |
| rs11118695 | 1.00[EUR][1000 genomes] |
| rs11118697 | 1.00[EUR][1000 genomes] |
| rs11804822 | 1.00[EUR][1000 genomes] |
| rs11811531 | 1.00[EUR][1000 genomes] |
| rs12057905 | 1.00[EUR][1000 genomes] |
| rs12058952 | 1.00[EUR][1000 genomes] |
| rs12070831 | 1.00[EUR][1000 genomes] |
| rs12073583 | 1.00[EUR][1000 genomes] |
| rs12077976 | 1.00[EUR][1000 genomes] |
| rs12085527 | 1.00[EUR][1000 genomes] |
| rs12086603 | 1.00[EUR][1000 genomes] |
| rs12086869 | 1.00[EUR][1000 genomes] |
| rs12087664 | 1.00[EUR][1000 genomes] |
| rs60865356 | 1.00[EUR][1000 genomes] |
| rs61501165 | 1.00[EUR][1000 genomes] |
| rs6663534 | 1.00[EUR][1000 genomes] |
| rs6667275 | 1.00[EUR][1000 genomes] |
| rs73094956 | 1.00[EUR][1000 genomes] |
| rs73101522 | 1.00[EUR][1000 genomes] |
| rs74144384 | 1.00[EUR][1000 genomes] |
| rs74144425 | 1.00[EUR][1000 genomes] |
| rs7525103 | 1.00[ASN][1000 genomes] |
| rs7536615 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9431075 | 1.00[ASN][1000 genomes] |
| rs9431077 | 1.00[ASN][1000 genomes] |
| rs9431078 | 1.00[ASN][1000 genomes] |
| rs9431080 | 1.00[ASN][1000 genomes] |
| rs9431084 | 1.00[ASN][1000 genomes] |
| rs9431442 | 1.00[ASN][1000 genomes] |
| rs9431450 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv997685 | chr1:220993527-221863416 | Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv535299 | chr1:220993527-221863416 | Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| 3 | nsv873199 | chr1:221136672-221451217 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:221435000-221437600 | Weak transcription | Fetal Lung | lung |
| 2 | chr1:221435600-221435800 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
