Variant report

Variant	rs7523552
Chromosome Location	chr1:92646532-92646533
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:91965368..91967670-chr1:92645246..92647453,2	K562	blood:

Variant related genes	Relation type
ENSG00000097046	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7542362	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012864	chr1:92067100-92827761	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv535029	chr1:92067100-92827761	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv530438	chr1:92091957-92827760	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1010179	chr1:92140209-92655952	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv535030	chr1:92140209-92655952	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv1007661	chr1:92220544-92655952	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv530046	chr1:92277460-92799794	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
8	nsv871508	chr1:92478130-92781579	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
9	nsv546821	chr1:92525678-92650349	ZNF genes & repeats Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92609800-92651200	Weak transcription	Fetal Kidney	kidney
2	chr1:92621000-92646800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:92625000-92646800	Weak transcription	Pancreas	Pancrea
4	chr1:92625000-92648200	Weak transcription	Fetal Stomach	stomach
5	chr1:92625600-92651000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr1:92626200-92652000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr1:92626600-92648400	Weak transcription	Fetal Intestine Small	intestine
8	chr1:92626600-92650800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr1:92626600-92657400	Weak transcription	Right Ventricle	heart
10	chr1:92626800-92646600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr1:92626800-92650000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr1:92626800-92651400	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr1:92627800-92648200	Weak transcription	Lung	lung
14	chr1:92628000-92648600	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr1:92628200-92651800	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr1:92628400-92646800	Weak transcription	Aorta	Aorta
17	chr1:92632800-92648800	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr1:92633800-92649400	Weak transcription	HSMMtube	muscle
19	chr1:92634600-92647200	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr1:92635200-92650400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr1:92635600-92648400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr1:92636200-92651000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr1:92636800-92652400	Weak transcription	Fetal Brain Female	brain
24	chr1:92637000-92647400	Weak transcription	Placenta	Placenta
25	chr1:92640200-92650200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr1:92640400-92649800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr1:92642400-92662600	Weak transcription	NHDF-Ad	bronchial
28	chr1:92644000-92647400	Strong transcription	Liver	Liver
29	chr1:92644200-92646600	Weak transcription	Fetal Lung	lung
30	chr1:92644800-92647400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr1:92645000-92648800	Weak transcription	Fetal Heart	heart
32	chr1:92645400-92649800	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr1:92645600-92649200	Weak transcription	Dnd41	blood
34	chr1:92645600-92650400	Weak transcription	Thymus	Thymus
35	chr1:92645800-92646600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr1:92645800-92646800	Strong transcription	Fetal Intestine Large	intestine
37	chr1:92645800-92646800	Strong transcription	Rectal Mucosa Donor 31	rectum
38	chr1:92645800-92647200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr1:92645800-92647200	Strong transcription	Brain Inferior Temporal Lobe	brain
40	chr1:92645800-92647200	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr1:92645800-92647200	Strong transcription	Ovary	ovary
42	chr1:92645800-92647400	Strong transcription	Primary hematopoietic stem cells	blood
43	chr1:92645800-92647400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr1:92645800-92647600	Strong transcription	Brain Anterior Caudate	brain
45	chr1:92645800-92648000	Strong transcription	Primary T cells from cord blood	blood
46	chr1:92645800-92648000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr1:92645800-92648000	Strong transcription	Adipose Nuclei	Adipose
48	chr1:92645800-92648000	Strong transcription	Brain Substantia Nigra	brain
49	chr1:92645800-92648200	Strong transcription	Left Ventricle	heart
50	chr1:92645800-92650200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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