Variant report

Variant	rs7524120
Chromosome Location	chr1:92865160-92865161
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RPAP2-1	chr1:92864531-92867613	ENSG00000261311.1
2	lnc-RPAP2-1	chr1:92864531-92867614	NONHSAT004455

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10874637	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10875319	1.00[JPT][hapmap]
rs10875349	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11164226	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164288	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11164312	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164546	0.90[ASN][1000 genomes]
rs11577572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11577839	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11578012	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11578400	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11580693	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11581176	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs11585255	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11586355	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11586989	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11588044	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11588153	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11589858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11803457	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11804321	1.00[CHB][hapmap]
rs12024731	0.90[ASN][1000 genomes]
rs12086394	0.90[ASN][1000 genomes]
rs12094293	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12401372	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12404806	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12406749	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12407622	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12411162	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12724638	0.82[CEU][hapmap];0.89[ASN][1000 genomes]
rs12727665	1.00[ASN][1000 genomes]
rs12729867	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12731923	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12734478	0.91[CEU][hapmap]
rs12735898	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12740246	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12743520	1.00[CHB][hapmap]
rs12749317	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12753920	0.89[ASN][1000 genomes]
rs12755781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12756786	1.00[CHB][hapmap]
rs12757533	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12759512	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1384612	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1384613	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1487536	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1487540	1.00[JPT][hapmap]
rs1542685	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17519385	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17519972	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17578686	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1809606	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1872007	1.00[JPT][hapmap]
rs2004814	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2046620	1.00[JPT][hapmap]
rs2069051	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2087194	1.00[JPT][hapmap]
rs2391158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2391162	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3103176	1.00[JPT][hapmap]
rs3103178	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs3103181	1.00[JPT][hapmap]
rs3131814	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs3131828	1.00[JPT][hapmap]
rs34090353	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35015161	0.89[ASN][1000 genomes]
rs35580949	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3929737	0.90[ASN][1000 genomes]
rs4393167	0.90[ASN][1000 genomes]
rs4414050	0.90[ASN][1000 genomes]
rs4658294	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4658297	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4658298	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4658299	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4658300	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4949888	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4970699	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4970713	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58394161	0.83[ASN][1000 genomes]
rs6603962	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6603971	0.90[ASN][1000 genomes]
rs6603973	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6603974	0.83[ASN][1000 genomes]
rs6604088	0.90[ASN][1000 genomes]
rs6604090	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6661384	0.90[ASN][1000 genomes]
rs6662379	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6662920	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6663118	0.81[ASN][1000 genomes]
rs6663278	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6663905	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6668803	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs66758257	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6702267	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs72720457	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs733012	0.90[ASN][1000 genomes]
rs745793	0.90[ASN][1000 genomes]
rs7511656	0.89[ASN][1000 genomes]
rs7511669	0.89[ASN][1000 genomes]
rs7517541	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7518974	0.90[ASN][1000 genomes]
rs7520275	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7522081	0.89[ASN][1000 genomes]
rs7539757	0.90[ASN][1000 genomes]
rs7543947	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7550680	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9439911	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9943178	0.90[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92863000-92865200	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr1:92863200-92874400	Weak transcription	Thymus	Thymus
3	chr1:92864000-92865200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr1:92864000-92865200	Enhancers	GM12878-XiMat	blood
5	chr1:92864000-92865800	Enhancers	Dnd41	blood
6	chr1:92864400-92865200	Enhancers	Primary B cells from peripheral blood	blood
7	chr1:92865000-92865200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:92865000-92865400	Weak transcription	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links