Variant report

Variant	rs7524172
Chromosome Location	chr1:172908914-172908915
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172908894..172911352-chr1:172913551..172915186,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10489275	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11799419	0.87[AFR][1000 genomes]
rs16845151	0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16845159	0.82[AFR][1000 genomes]
rs16845169	1.00[AMR][1000 genomes]
rs4615873	1.00[AMR][1000 genomes]
rs6658802	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73046026	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73046030	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73049845	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7416404	1.00[AMR][1000 genomes]
rs7548612	1.00[AMR][1000 genomes]
rs7550854	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7550931	0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172903600-172914200	Weak transcription	Aorta	Aorta
2	chr1:172904000-172909200	Weak transcription	Colon Smooth Muscle	Colon
3	chr1:172904000-172909400	Weak transcription	HSMMtube	muscle
4	chr1:172904200-172909800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr1:172904600-172909400	Weak transcription	HMEC	breast
6	chr1:172905400-172910600	Weak transcription	Left Ventricle	heart
7	chr1:172905600-172909600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:172905600-172916000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:172906000-172910600	Weak transcription	Spleen	Spleen
10	chr1:172906000-172910600	Weak transcription	A549	lung
11	chr1:172907200-172911200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr1:172907400-172911200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:172907400-172911200	Enhancers	NHDF-Ad	bronchial
14	chr1:172907600-172911400	Enhancers	NHLF	lung
15	chr1:172908400-172909000	Enhancers	Lung	lung
16	chr1:172908400-172909400	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr1:172908400-172909600	Enhancers	Primary B cells from peripheral blood	blood
18	chr1:172908400-172910800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr1:172908400-172911200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr1:172908400-172911200	Enhancers	Fetal Stomach	stomach
21	chr1:172908600-172909600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr1:172908600-172909800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr1:172908600-172910200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr1:172908800-172909000	Enhancers	Pancreas	Pancrea
25	chr1:172908800-172910000	Enhancers	Placenta Amnion	Placenta Amnion
26	chr1:172908800-172910800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr1:172908800-172910800	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr1:172908800-172910800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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