Variant report

Variant	rs7524435
Chromosome Location	chr1:86548582-86548583
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs11487918	0.93[ASN][1000 genomes]
rs11801529	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12740502	0.93[ASN][1000 genomes]
rs12743345	0.93[ASN][1000 genomes]
rs12748565	0.88[ASN][1000 genomes]
rs1408666	0.93[ASN][1000 genomes]
rs1629358	0.93[ASN][1000 genomes]
rs1698734	0.93[ASN][1000 genomes]
rs1698735	0.93[ASN][1000 genomes]
rs1698736	0.93[ASN][1000 genomes]
rs1698737	0.93[ASN][1000 genomes]
rs2390052	0.91[ASN][1000 genomes]
rs4522024	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs473232	0.93[ASN][1000 genomes]
rs474106	0.93[ASN][1000 genomes]
rs477862	0.93[ASN][1000 genomes]
rs485204	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs485816	0.93[ASN][1000 genomes]
rs486680	0.93[ASN][1000 genomes]
rs489325	0.93[ASN][1000 genomes]
rs4912445	0.93[ASN][1000 genomes]
rs494796	0.93[ASN][1000 genomes]
rs501058	0.93[ASN][1000 genomes]
rs505589	0.93[ASN][1000 genomes]
rs514185	0.93[ASN][1000 genomes]
rs521314	0.88[ASN][1000 genomes]
rs541936	0.93[ASN][1000 genomes]
rs546269	0.93[ASN][1000 genomes]
rs557928	0.93[ASN][1000 genomes]
rs564224	0.93[ASN][1000 genomes]
rs565639	0.93[ASN][1000 genomes]
rs582622	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs583203	0.93[ASN][1000 genomes]
rs587650	0.93[ASN][1000 genomes]
rs589343	0.93[ASN][1000 genomes]
rs600184	0.93[ASN][1000 genomes]
rs601167	0.93[ASN][1000 genomes]
rs614895	0.93[ASN][1000 genomes]
rs616715	0.93[ASN][1000 genomes]
rs61800725	0.93[ASN][1000 genomes]
rs61800726	0.93[ASN][1000 genomes]
rs61800728	0.93[ASN][1000 genomes]
rs629719	0.93[ASN][1000 genomes]
rs631054	0.93[ASN][1000 genomes]
rs631935	0.93[ASN][1000 genomes]
rs641712	0.88[ASN][1000 genomes]
rs648355	0.93[ASN][1000 genomes]
rs648366	0.93[ASN][1000 genomes]
rs657026	0.93[ASN][1000 genomes]
rs657540	0.93[ASN][1000 genomes]
rs658313	0.91[ASN][1000 genomes]
rs6674872	0.93[ASN][1000 genomes]
rs6686088	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6691400	0.93[ASN][1000 genomes]
rs6699364	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs673928	0.93[ASN][1000 genomes]
rs679734	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs695051	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7526060	0.93[ASN][1000 genomes]
rs7552025	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817212	chr1:86127851-86658426	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv546722	chr1:86278315-86891073	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1010312	chr1:86469730-86686426	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv525678	chr1:86487914-86549498	Enhancers Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1012467	chr1:86494935-86686426	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1797916	chr1:86529538-86556298	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv1009092	chr1:86532988-86724805	Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv535024	chr1:86532988-86724805	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:86547000-86556800	Weak transcription	Pancreas	Pancrea
2	chr1:86547400-86553600	Weak transcription	Fetal Lung	lung

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