Variant report

Variant	rs7525388
Chromosome Location	chr1:93936322-93936323
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10157785	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11799859	1.00[EUR][1000 genomes]
rs11802421	1.00[EUR][1000 genomes]
rs11805046	1.00[EUR][1000 genomes]
rs11808266	1.00[EUR][1000 genomes]
rs13373766	1.00[EUR][1000 genomes]
rs17109954	1.00[EUR][1000 genomes]
rs17110016	1.00[EUR][1000 genomes]
rs17131715	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17131717	1.00[EUR][1000 genomes]
rs35555794	1.00[EUR][1000 genomes]
rs55670441	1.00[EUR][1000 genomes]
rs55742446	1.00[EUR][1000 genomes]
rs55777828	1.00[AMR][1000 genomes]
rs55959166	1.00[EUR][1000 genomes]
rs56405388	1.00[AMR][1000 genomes]
rs57291093	1.00[EUR][1000 genomes]
rs57353954	1.00[EUR][1000 genomes]
rs58351576	1.00[EUR][1000 genomes]
rs58505360	1.00[EUR][1000 genomes]
rs59045869	1.00[EUR][1000 genomes]
rs59250599	1.00[EUR][1000 genomes]
rs60032869	1.00[EUR][1000 genomes]
rs60046384	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60517691	1.00[EUR][1000 genomes]
rs61215181	1.00[EUR][1000 genomes]
rs61671588	1.00[EUR][1000 genomes]
rs6541360	1.00[EUR][1000 genomes]
rs6541378	1.00[EUR][1000 genomes]
rs6664053	1.00[EUR][1000 genomes]
rs6678465	1.00[EUR][1000 genomes]
rs6682265	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6687167	1.00[EUR][1000 genomes]
rs6703963	1.00[EUR][1000 genomes]
rs72957300	1.00[EUR][1000 genomes]
rs72961310	1.00[EUR][1000 genomes]
rs74101464	1.00[EUR][1000 genomes]
rs74101603	1.00[EUR][1000 genomes]
rs74101663	1.00[EUR][1000 genomes]
rs74101667	1.00[EUR][1000 genomes]
rs74101669	1.00[EUR][1000 genomes]
rs74101670	1.00[EUR][1000 genomes]
rs74104033	1.00[EUR][1000 genomes]
rs7518171	1.00[EUR][1000 genomes]
rs7530923	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7545358	1.00[EUR][1000 genomes]
rs754899	1.00[EUR][1000 genomes]
rs9662414	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871640	chr1:93807122-93953469	Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93915200-93937000	Weak transcription	Esophagus	oesophagus
2	chr1:93915200-93937000	Weak transcription	Lung	lung
3	chr1:93917600-93937200	Weak transcription	Fetal Brain Male	brain
4	chr1:93919800-93937000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:93920000-93936800	Weak transcription	NH-A	brain
6	chr1:93920000-93943800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:93920400-93936600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:93921200-93936600	Weak transcription	HUVEC	blood vessel
9	chr1:93921200-93937000	Weak transcription	Left Ventricle	heart
10	chr1:93921200-93939800	Weak transcription	Right Ventricle	heart
11	chr1:93922600-93944000	Weak transcription	Gastric	stomach
12	chr1:93924400-93937000	Weak transcription	Fetal Lung	lung
13	chr1:93925800-93937000	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr1:93926000-93937200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr1:93927200-93936400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr1:93927600-93943800	Weak transcription	Pancreas	Pancrea
17	chr1:93928400-93936600	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr1:93929000-93946400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr1:93929400-93936600	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr1:93930000-93937200	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr1:93930600-93943600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr1:93933200-93936800	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr1:93933200-93937600	Weak transcription	Fetal Kidney	kidney
24	chr1:93933400-93937000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr1:93933400-93943800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr1:93933600-93937000	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr1:93933800-93936800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr1:93934200-93939000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr1:93934200-93943600	Weak transcription	Fetal Intestine Small	intestine
30	chr1:93934200-93943800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr1:93935600-93937600	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr1:93935800-93936800	Weak transcription	Hela-S3	cervix
33	chr1:93935800-93937200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr1:93936000-93936600	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr1:93936000-93937200	Weak transcription	HepG2	liver
36	chr1:93936000-93937400	Enhancers	H1 Cell Line	embryonic stem cell

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