Variant report

Variant	rs7525976
Chromosome Location	chr1:94185931-94185932
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94145993..94148104-chr1:94183556..94186088,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DNTTIP2-1	chr1:94185441-94186304	NONHSAT004544

Variant related genes	Relation type
ENSG00000137936	Chromatin interaction

rs_ID	r²[population]
rs10489541	1.00[EUR][1000 genomes]
rs11164954	1.00[EUR][1000 genomes]
rs11800247	1.00[EUR][1000 genomes]
rs11802499	1.00[EUR][1000 genomes]
rs11803313	1.00[AMR][1000 genomes]
rs11805042	1.00[EUR][1000 genomes]
rs11806965	1.00[EUR][1000 genomes]
rs12068954	1.00[EUR][1000 genomes]
rs17110193	1.00[EUR][1000 genomes]
rs17110312	1.00[EUR][1000 genomes]
rs17110320	1.00[EUR][1000 genomes]
rs17110613	1.00[EUR][1000 genomes]
rs2221923	1.00[EUR][1000 genomes]
rs236309	1.00[EUR][1000 genomes]
rs35650636	1.00[EUR][1000 genomes]
rs58024738	1.00[EUR][1000 genomes]
rs58126899	1.00[EUR][1000 genomes]
rs58679238	1.00[EUR][1000 genomes]
rs59493724	1.00[EUR][1000 genomes]
rs59653321	1.00[EUR][1000 genomes]
rs60179644	1.00[EUR][1000 genomes]
rs60188127	1.00[EUR][1000 genomes]
rs60226009	1.00[EUR][1000 genomes]
rs60680584	1.00[EUR][1000 genomes]
rs61372707	1.00[EUR][1000 genomes]
rs61564641	1.00[EUR][1000 genomes]
rs6541391	1.00[EUR][1000 genomes]
rs6541392	1.00[EUR][1000 genomes]
rs6661879	1.00[EUR][1000 genomes]
rs6671646	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6677068	1.00[EUR][1000 genomes]
rs6686775	1.00[EUR][1000 genomes]
rs72963382	1.00[EUR][1000 genomes]
rs72967379	1.00[EUR][1000 genomes]
rs72971232	1.00[EUR][1000 genomes]
rs7526263	1.00[EUR][1000 genomes]
rs7541690	1.00[EUR][1000 genomes]
rs7543184	1.00[EUR][1000 genomes]
rs7548581	1.00[EUR][1000 genomes]
rs871855	1.00[EUR][1000 genomes]

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94172400-94186600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:94175000-94187600	Weak transcription	Gastric	stomach
3	chr1:94176800-94186600	Weak transcription	Right Ventricle	heart
4	chr1:94177000-94186600	Weak transcription	Right Atrium	heart
5	chr1:94179200-94187600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr1:94179200-94188200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr1:94182200-94187600	Weak transcription	Fetal Brain Male	brain
8	chr1:94182400-94186400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr1:94182400-94187200	Weak transcription	Psoas Muscle	Psoas
10	chr1:94182400-94188600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr1:94182600-94186400	Weak transcription	Left Ventricle	heart
12	chr1:94182600-94186800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr1:94182600-94188200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr1:94182800-94186600	Weak transcription	HMEC	breast
15	chr1:94182800-94187000	Weak transcription	Aorta	Aorta
16	chr1:94182800-94187200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:94183000-94188200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr1:94183200-94186400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr1:94183200-94186400	Weak transcription	Placenta	Placenta
20	chr1:94184000-94187800	Weak transcription	NHLF	lung
21	chr1:94185400-94189800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr1:94185400-94190000	Enhancers	Hela-S3	cervix
23	chr1:94185600-94189600	Enhancers	HSMM	muscle
24	chr1:94185600-94190400	Enhancers	Fetal Muscle Leg	muscle
25	chr1:94185800-94186000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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