Variant report

Variant	rs7528161
Chromosome Location	chr1:172857779-172857780
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172855842..172858682-chr1:172958652..172961353,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10737295	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10753064	0.82[ASN][1000 genomes]
rs10798242	0.85[ASN][1000 genomes]
rs10912487	0.84[AMR][1000 genomes]
rs10912497	0.85[ASN][1000 genomes]
rs12035082	0.85[ASN][1000 genomes]
rs12037203	0.85[ASN][1000 genomes]
rs12037606	0.85[ASN][1000 genomes]
rs12037781	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12088638	0.85[ASN][1000 genomes]
rs12097671	0.82[ASN][1000 genomes]
rs12407389	0.85[ASN][1000 genomes]
rs12747422	0.80[ASN][1000 genomes]
rs1894636	0.85[ASN][1000 genomes]
rs1988983	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2213746	0.85[ASN][1000 genomes]
rs2227203	0.85[ASN][1000 genomes]
rs2422257	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2422260	0.85[ASN][1000 genomes]
rs4145469	0.85[ASN][1000 genomes]
rs4916199	0.85[ASN][1000 genomes]
rs4916282	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4916286	0.85[ASN][1000 genomes]
rs5028523	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6425162	0.83[AMR][1000 genomes]
rs6664499	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6672265	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6673011	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6688532	0.85[ASN][1000 genomes]
rs7527986	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7539319	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs926472	0.85[ASN][1000 genomes]
rs926473	0.85[ASN][1000 genomes]
rs926474	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3587	chr1:172836950-172882218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172852600-172862400	Weak transcription	Pancreas	Pancrea
2	chr1:172855400-172862400	Weak transcription	NH-A	brain
3	chr1:172855600-172861800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:172855600-172861800	Weak transcription	Hela-S3	cervix
5	chr1:172856800-172861600	Weak transcription	HUVEC	blood vessel
6	chr1:172857000-172858200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:172857000-172862000	Weak transcription	A549	lung
8	chr1:172857000-172862400	Weak transcription	Stomach Mucosa	stomach
9	chr1:172857600-172857800	Enhancers	H9 Cell Line	embryonic stem cell
10	chr1:172857600-172857800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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