Variant report

Variant	rs7528346
Chromosome Location	chr1:67155465-67155466
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF274	chr1:67155032-67156027	NT2-D1	testis:	n/a	n/a
2	ZNF274	chr1:67155400-67155727	H1-hESC	embryonic stem cell:	n/a	n/a
3	SETDB1	chr1:67155276-67155532	U2OS	brain:	n/a	n/a

Variant related genes	Relation type
SGIP1	TF binding region

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10789216	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10889647	0.89[ASN][1000 genomes]
rs10889649	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11208948	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11208951	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12063436	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1325268	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1359463	0.85[AFR][1000 genomes]
rs1408852	0.89[ASN][1000 genomes]
rs1498354	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1547644	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16844	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2031477	0.88[AFR][1000 genomes]
rs2181625	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2312573	0.84[EUR][1000 genomes]
rs3738167	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs489300	0.86[ASN][1000 genomes]
rs650202	0.86[ASN][1000 genomes]
rs6588216	0.82[EUR][1000 genomes]
rs6659325	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6682534	0.88[AFR][1000 genomes]
rs682896	0.86[ASN][1000 genomes]
rs7512401	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869413	chr1:67082512-67414286	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67114200-67156400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr1:67140600-67161200	Weak transcription	Esophagus	oesophagus
3	chr1:67144600-67160800	Weak transcription	Lung	lung
4	chr1:67148200-67156600	Weak transcription	Aorta	Aorta
5	chr1:67149200-67161000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr1:67152000-67162800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:67152600-67155800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:67152800-67159800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:67153400-67161200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:67153600-67155600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr1:67153600-67155800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr1:67154200-67157200	Strong transcription	Brain Hippocampus Middle	brain
13	chr1:67154400-67156200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:67154600-67156200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:67154800-67155600	Strong transcription	Duodenum Smooth Muscle	Duodenum
16	chr1:67154800-67155600	Strong transcription	NHDF-Ad	bronchial
17	chr1:67154800-67155800	Strong transcription	Brain Angular Gyrus	brain
18	chr1:67154800-67155800	Strong transcription	NH-A	brain
19	chr1:67154800-67156000	Strong transcription	NHLF	lung
20	chr1:67154800-67156200	Strong transcription	Brain Cingulate Gyrus	brain
21	chr1:67154800-67156800	Strong transcription	Fetal Brain Female	brain
22	chr1:67154800-67157200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr1:67154800-67157400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr1:67155000-67155600	Strong transcription	Osteobl	bone
25	chr1:67155000-67155800	Strong transcription	Brain Anterior Caudate	brain
26	chr1:67155000-67155800	Strong transcription	Fetal Brain Male	brain
27	chr1:67155000-67155800	Strong transcription	Fetal Heart	heart
28	chr1:67155000-67156000	Strong transcription	Brain Inferior Temporal Lobe	brain
29	chr1:67155000-67156000	Strong transcription	Left Ventricle	heart
30	chr1:67155000-67157000	Strong transcription	Brain Germinal Matrix	brain
31	chr1:67155200-67158200	Strong transcription	Muscle Satellite Cultured Cells	--
32	chr1:67155400-67156000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr1:67155400-67156800	Strong transcription	Brain Substantia Nigra	brain
34	chr1:67155400-67157000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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