Variant report
| Variant | rs7528689 |
|---|---|
| Chromosome Location | chr1:210782669-210782670 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10746430 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10779540 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11583694 | 1.00[JPT][hapmap] |
| rs17260515 | 1.00[JPT][hapmap] |
| rs4245753 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4245754 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4297293 | 1.00[YRI][hapmap] |
| rs4359079 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4426039 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4517405 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4567341 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4579826 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4592309 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4607955 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4607956 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4951721 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6540612 | 0.90[ASN][1000 genomes] |
| rs6688226 | 1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6695786 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7518254 | 1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv873148 | chr1:210665583-210994339 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv873149 | chr1:210749312-210793972 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv522480 | chr1:210779936-210848344 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers | Chromatin interactive regionlncRNAmiRNA target site | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:210781400-210791000 | Weak transcription | HSMMtube | muscle |
