Variant report

Variant	rs7530845
Chromosome Location	chr1:94437462-94437463
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1159834	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12407172	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs41430846	1.00[AFR][1000 genomes]
rs4847188	1.00[AFR][1000 genomes]
rs4847276	1.00[AFR][1000 genomes]
rs61597540	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs714096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74102018	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7550770	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516137	chr1:94404238-94504545	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94422600-94445000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:94433400-94442400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:94433600-94437600	Weak transcription	HSMMtube	muscle
4	chr1:94434800-94437600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:94436200-94437800	Weak transcription	Psoas Muscle	Psoas
6	chr1:94436400-94437600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr1:94436600-94437600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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