Variant report

Variant	rs7531046
Chromosome Location	chr1:215461986-215461987
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:215460715..215462966-chr1:215464871..215466869,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10864165	0.83[EUR][1000 genomes]
rs10864166	0.89[EUR][1000 genomes]
rs10864169	0.91[EUR][1000 genomes]
rs11120524	0.85[EUR][1000 genomes]
rs11120530	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11120533	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11120539	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11120541	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11120542	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11120581	0.82[EUR][1000 genomes]
rs11583745	0.85[EUR][1000 genomes]
rs11588455	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12026669	0.87[EUR][1000 genomes]
rs12026702	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12037855	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12044688	0.91[EUR][1000 genomes]
rs12047082	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12049601	0.91[EUR][1000 genomes]
rs12407482	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12739619	0.83[EUR][1000 genomes]
rs12750276	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12752882	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1339399	0.80[AFR][1000 genomes]
rs1339401	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1416653	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1416654	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1416655	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1416656	0.83[AFR][1000 genomes]
rs1416661	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1538544	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2153244	0.85[EUR][1000 genomes]
rs3933352	0.91[EUR][1000 genomes]
rs4098470	0.91[EUR][1000 genomes]
rs4098471	0.91[EUR][1000 genomes]
rs4655280	0.82[AFR][1000 genomes]
rs4655397	0.91[EUR][1000 genomes]
rs4655398	0.91[EUR][1000 genomes]
rs4655399	0.91[EUR][1000 genomes]
rs4655400	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6540886	0.84[EUR][1000 genomes]
rs6540887	0.84[EUR][1000 genomes]
rs6670661	0.85[EUR][1000 genomes]
rs6674743	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7522160	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs946487	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs946488	0.91[EUR][1000 genomes]
rs946489	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs946490	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014878	chr1:215453286-215527616	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1003660	chr1:215453286-215529747	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215458800-215463200	Weak transcription	HSMM	muscle
2	chr1:215461200-215463200	Weak transcription	NHDF-Ad	bronchial

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