Variant report

Variant	rs7532162
Chromosome Location	chr1:151891562-151891563
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12064020	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs12067912	1.00[AMR][1000 genomes]
rs16828432	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs16833610	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs16833734	1.00[EUR][1000 genomes]
rs1826173	1.00[AMR][1000 genomes]
rs2337687	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs6587639	0.89[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6663064	0.80[YRI][hapmap]
rs6671719	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6684312	0.90[YRI][hapmap]
rs6686874	0.80[YRI][hapmap]
rs6690449	0.85[YRI][hapmap]
rs7533854	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs7535002	0.80[YRI][hapmap]
rs7548044	1.00[TSI][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs998750	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007097	chr1:151832796-152227977	Strong transcription Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
2	nsv1012327	chr1:151835544-152200890	Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
3	nsv535159	chr1:151835544-152200890	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
4	nsv547852	chr1:151843044-151955230	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
5	nsv872441	chr1:151850072-152034430	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	191 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7532162	THEM4	cis	lymphoblastoid	seeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151883200-151892200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr1:151888400-151891600	Weak transcription	GM12878-XiMat	blood
3	chr1:151889400-151892200	Weak transcription	K562	blood
4	chr1:151889600-151892600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:151890400-151891600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr1:151890800-151891800	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr1:151891200-151892800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:151891200-151892800	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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